EY756026

Overview
NameEY756026
Unique NameEY756026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:444..1099. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.314e-59
Identity = 107/119 (89.92%), Postives = 115/119 (96.64%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P + TYDGRTIRYPDPLIKANDTIKLDLE NKITDFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPKGKGIKL+I+EEA+KR
Sbjct:  133 PYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.358e-59
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L TYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPK KGIKLSIIEEARKR
Sbjct:  137 PYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 225.328 bits (573), Expect = 2.141e-58
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L TYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  137 PYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.141e-58
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L TYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  137 PYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.796e-58
Identity = 106/119 (89.08%), Postives = 114/119 (95.80%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L TYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKG+KPWVSLPKGKGIKL+IIE+ARKR
Sbjct:  137 PYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 8.135e-58
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L TYDGRTIRYPDP+IKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  137 PYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.062e-57
Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L TYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  137 PYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.812e-57
Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   22 PILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            P L TYDGRTIRYPDPLIKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  137 PYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.078e-45
Identity = 84/126 (66.67%), Postives = 102/126 (80.95%), Query Frame = 1
Query:    1 FVDPASDPILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            FV   + P L T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  130 FVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of EY756026 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.545e-45
Identity = 83/126 (65.87%), Postives = 101/126 (80.16%), Query Frame = 1
Query:    1 FVDPASDPILPTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 378
            FV     P L T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  130 FVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
The following BLAST results are available for this feature:
BLAST of EY756026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RS4_PRUAR4.314e-5989.9240S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_GOSHI7.358e-5991.6040S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS42_ARATH2.141e-5889.9240S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH2.141e-5889.9240S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU2.796e-5889.0840S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_ORYSJ8.135e-5888.2440S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS43_ARATH1.062e-5789.0840S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS4_MAIZE1.812e-5787.3940S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4X_MONDO2.078e-4566.6740S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_CRIGR3.545e-4565.8740S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-G06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756026 ID=EY756026; Name=EY756026; organism=Citrus sinensis; type=EST; length=657bp
TTCGTCGACCCCGCGTCCGATCCCATACTTCCCACCTATGATGGGCGTAC
CATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTG
ACTTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAAT
ATTGTCATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAA
GAACAGGGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATG
CCCTTGGTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATCGGG
AAGGGTTCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTT
GTCCATCATTGAGGAAGCTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTT
AAGCTTTTACAATGAATTTGGATGCATTTTGCTGCTTTGTTTTTTCTTGT
TGAATTAGAGCTGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAA
AAATGAATCTTTATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCT
GCTTTGTCCTTTTTTATTTTAGCTACTATTTGGTGGATGTTATTTTCAAC
TATTTAATCTAAGTTCATGTATCTCTTTATCAAAAAAAAAAAAAAAAAAA
AAAAAAA
back to top