EY755849

Overview
NameEY755849
Unique NameEY755849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_SYNS3 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9311) GN=infC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.000e-14
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  387 ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQEPPKKKDKQVVDE 713
            +++ ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A  +    R+ RN+ + L P KA L K     K KD++VV++
Sbjct:   92 SHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAEVLLRRMAKDLEEPAEVQQPPKREGRNMIMFLTPRKAPLVK-----KDKDEEVVNK 196          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3C_CYAME (Translation initiation factor IF-3, chloroplastic OS=Cyanidioschyzon merolae GN=infC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 51/126 (40.48%), Postives = 70/126 (55.56%), Query Frame = -2
Query:  444 VSPDADPPVSE**FQ*I*IYXXXXXXXXXXKSAA--NRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVPNKA 812
            ++P+ADPPV +     I  Y            A   N+  LKE++M YN+++HDY VRL  A KFLK GDKVKV + LKGRE +   +A   + +FQ DV  LA   +  +   RN+  I VP K+
Sbjct:   55 INPNADPPVCK-----IVNYGKYKFELEKKAKAKRKNQSQLKEIQMSYNMEEHDYQVRLSQACKFLKAGDKVKVTLMLKGREMQHLELAQNKMAQFQADVSSLAQLAKPPSQEGRNLSAIFVPKKS 175          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_SYNSC (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9605) GN=infC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = -2
Query:  396 ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQEPPKKKDKQV 713
            +++ ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A  +    R+ RN+ + L P K  L K +E  +  +K V
Sbjct:   92 SHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEEKEQAANKAV 198          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_SYNP2 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  444 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA 701
            DLKE+KM Y I++HDY VR+ +A++FLK GDKVK  +  +GRE +  N+A +L+ R   D+ E+   + +  R+ RN+ +IL P K+
Sbjct:   91 DLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMMILAPKKS 177          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_PROM5 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9515) GN=infC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = -2
Query:  405 ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQEPPKKKD 713
            +++ ++KE+KM Y ID+HDY VR+  A +FLK GDKVK  V  +GRE +  N+A  L+ R  ND+ E +  + +  R+ RN+ + L P K  L K +E  K+ +
Sbjct:   92 SHQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQHSNLAETLLLRMANDLEEQSEVQQRPKREGRNMIMFLSPRKTPLIKKEEDAKENN 195          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_PROM0 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9301) GN=infC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.485e-14
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = -2
Query:  423 ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQE 713
            +++ ++KE+KM Y ID+HDY VR+  A KFLK GDKVK  V  +GRE +  N+A  L+ R  ND+ E +  + K  R+ RN+ + L P K  L K  +
Sbjct:   92 SHQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVIFRGREIQHSNLAETLLLRMANDLEEQSEVQQKPKREGRNMIMFLSPRKTPLIKKDD 189          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_PROM9 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9312) GN=infC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = -2
Query:  423 ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQE 713
            +++ ++KE+KM Y ID+HDY VR+  A KFLK GDKVK  V  +GRE +  N+A  L+ +  ND+ E +  + K  R+ RN+ + L P K  L K  E
Sbjct:   92 SHQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVFFRGREIQHSNLAETLLLKMANDLEEQSEIQQKPKREGRNMIMFLSPRKTPLIKKDE 189          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  447 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 701
            D+KE+KM Y ID+HDY+VR+  A++FLK GDKVK  +  +GRE +  N+A EL+ R   D+ ++A  +    ++ RN+ ++L P K
Sbjct:   91 DIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATITFRGREIQHSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_PROMS (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain AS9601) GN=infC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.445e-13
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = -2
Query:  423 ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQE 713
            +++ ++KE+KM Y ID+HDY VR+  A KFLK GDKVK  V  +GRE +  N+A  L+ +  ND+ E +  + K  R+ RN+ + L P K  L K  +
Sbjct:   92 SHQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVIFRGREIQHSNLAETLLLKMANDLEEQSEVQQKPKREGRNMIMFLSPRKTPLIKKDD 189          
BLAST of EY755849 vs. ExPASy Swiss-Prot
Match: IF3_PROM1 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain NATL1A) GN=infC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.445e-13
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  411 ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA-LLQKAQE--PPKK 713
            +++ ++KE+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +   +A  L++R   D+ E A  +    R+ RN+ + L P K  LL+K  E   PKK
Sbjct:   92 SHQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVIFRGREIQHTALAETLLKRMSKDLEEKAEVQQSPKREGRNMIMFLTPRKTPLLKKESETTEPKK 196          
The following BLAST results are available for this feature:
BLAST of EY755849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
IF3_SYNS31.000e-1442.73Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3C_CYAME1.307e-1440.48Translation initiation factor IF-3, chloroplastic ... [more]
IF3_SYNSC2.229e-1441.12Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_SYNP22.229e-1443.68Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_PROM56.485e-1440.38Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM06.485e-1442.86Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM98.469e-1442.86Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_MICAN1.106e-1343.02Translation initiation factor IF-3 OS=Microcystis ... [more]
IF3_PROMS1.445e-1341.84Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM11.445e-1342.86Translation initiation factor IF-3 OS=Prochlorococ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-E11-CT.R Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755849 ID=EY755849; Name=EY755849; organism=Citrus sinensis; type=EST; length=840bp
CTTTTTTTTTTTTTTTTTTTTTTTTTTACGGAACAAATACCACGACTGGT
CATCTTGCATACAAAATTTTAAAAATTGTTCTTGCTTTCAGAACAGCCTC
ACAGGAAACATATACATGCCCATTTACTGAACCTTGTATGACGTCTTGAT
TGTCTAAAGAAAAAAGAAGTAATTGATCTATCAAATGTTACAACTATTCG
ATCTGAAAAAGCTGCTTATGTTATAGAATATCTAATAAATATGCCACACA
GCTGTAACACACTAATTCTATACACGAATTTCAACGCATCCCAGTCGAAA
GGCACATATAAGGATTACCAGCCAATTTGTTATGTTGTCAAAACCCCACT
TGGAATGGCTGAATGCACTCAGACACCAGTTGAGACTTCATCTACAACTT
GTTTATCTTTCTTCTTCGGTGGTTCTTGAGCCTTCTGTAAGAGGGCCTTA
TTTGGAACTAAAATTATAAATATATTCCTATCTCTGAAATTTTTGTTCTC
CTCACTAGCAAGCTCCCCAACATCATTCTGGAAACGTCGTATTAGCTCAA
TAGCAATATTTCTGAATTCATTTTCCCGCCCTTTGAGGTTCACTATGACC
TTAACCTTGTCTCCGTCTTTCAGAAACTTCCTTGCAGCTTTTAGACGCAC
AGAATAATCATGCTGGTCAATATTATAACCCATTTTAAGCTCCTTCAAAT
CCATCCGATTGGCTGCACTTTTCTTCTGCTGCCCTTTCTTCTTCTTTTGC
TGGTATATCTATATTTATTGGAATCATTACTCTGACACTGGAGGATCTGC
ATCTGGGGAAACATCACCAGGTCTAGTTAGCATCCTCCGC
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