GE213274

Overview
NameGE213274
Unique NameGE213274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1310 contig Csv1_Contig1310:151..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213274 vs. ExPASy Swiss-Prot
Match: WAX2_ARATH (Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.605e-29
Identity = 80/209 (38.28%), Postives = 116/209 (55.50%), Query Frame = -1 
Query:   22 TFVVERNHLNKFRLQTWAIPRYNFQYLFQRQNESINRXXXXXXXXXXEKGAKVISLGLMNQGEELNRYGGVFVHKHPQLKMKVVDGSSLAVAVVINSIPKGTTQVVLRGALTKVAYAIAFALCQKGIQV--VTLREDEHEKLRKSFGAKSECNNLLLSRSYSQ----KIWLVGKGLTEEEQSKAKKGTIFIPFSQFPPNDKKIRKDCMY 630
            +F   RN+L     QTW +PR+ FQY      + IN           + G KVISL  +N+ E LN  G +FV+KHP L+++VV G++L  AV++  IPK   +V L GA +K+  AIA  LC++G++V  +TL  +  +K++K    + + NNL+    Y+     K W+VGK LT  EQS A  GT F  F    P   K R++C Y
Sbjct:  356 SFYTLRNNL----CQTWGVPRFGFQYFLPFATKGINDQIEAAILRADKIGVKVISLAALNKNEALNGGGTLFVNKHPDLRVRVVHGNTLTAAVILYEIPKDVNEVFLTGATSKLGRAIALYLCRRGVRVLMLTLSMERFQKIQKEAPVEFQ-NNLVQVTKYNAAQHCKTWIVGKWLTPREQSWAPAGTHFHQF--VVPPILKFRRNCTY 557
The following BLAST results are available for this feature:
BLAST of GE213274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WAX2_ARATH1.605e-2938.28Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 ... [more]
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Properties
Property NameValue
Genbank description125 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213274 ID=GE213274; Name=GE213274; organism=Citrus sinensis; type=EST; length=654bp
ATTAGCGTGGTCGCGGCCGAGGTACATACAGTCTTTACGTATTTTCTTAT
CATTTGGTGGAAACTGTGAGAAAGGAATGAAGATTGTTCCCTTTTTTGCC
TTGGATTGTTCTTCTTCAGTCAGCCCTTTTCCCACCAACCATATCTTTTG
GGAGTAGCTTCTCGAGAGAAGCAAATTATTACATTCAGATTTGGCCCCAA
ATGATTTTCTAAGCTTCTCGTGCTCATCCTCACGTAATGTTACAACCTGG
ATGCCCTTTTGGCATAAGGCAAAGGCAATGGCATAAGCGACCTTTGTGAG
AGCGCCTCTAAGGACCACTTGTGTTGTTCCCTTTGGTATGCTGTTTATCA
CTACTGCCACTGCTAAGCTACTCCCATCCACTACCTTCATTTTAAGCTGA
GGATGCTTGTGCACGAATACCCCACCGTAACGGTTAAGCTCCTCTCCTTG
ATTCATGAGACCTAGACTTATCACTTTAGCTCCTTTTTCCTCAGCTTCTA
GTATGGCTTCTTCAATCAACCTATTGATCGATTCATTTTGCCGCTGGAAC
AAATATTGAAAATTGTATCTGGGTATTGCCCAAGTCTGTAGTCTGAATTT
ATTAAGGTGATTCCTCTCAACCACAAAGGTACCTGCCCGGGCGGCCGCTC
GAAA
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