GE213272

Overview
NameGE213272
Unique NameGE213272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9742 contig Csv1_Contig9742:228..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.339e-86
Identity = 153/228 (67.11%), Postives = 177/228 (77.63%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            ++L  GDHVLPVFTGEC DC HC+S+ SNMC LLRIN  RGVM+ DGQSRFSING+P+ HF+GTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+STGLGATLNVAKP +                              VD ++ RFE+AKKFGVT+FVN  ++ +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWG+AVLVGVP K+AVF T P+N
Sbjct:   84 TELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMN 311          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.339e-86
Identity = 153/228 (67.11%), Postives = 177/228 (77.63%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            ++L  GDHVLPVFTGEC DC HC+S+ SNMC LLRIN  RGVM+ DGQSRFSING+P+ HF+GTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+STGLGATLNVAKP +                              VD ++ RFE+AKKFGVT+FVN  ++ +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWG+AVLVGVP K+AVF T P+N
Sbjct:   84 TELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMN 311          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.339e-86
Identity = 153/229 (66.81%), Postives = 178/229 (77.73%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPINV 725
            ++L  GDHVLPVFTGEC DC HC+S+ SNMC LLRIN  RGVM+ DGQSRFSING+P+ HF+GTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+STGLGATLNVAKP +                              VD ++ RFE+AKKFGVT+FVN  ++ +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWG+AVLVGVP K+AVF T P+N+
Sbjct:   84 TELGPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMINDGQSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMNL 312          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.055e-86
Identity = 152/228 (66.67%), Postives = 176/228 (77.19%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            +DL+ GDHVLPVFTGEC DC HC+S+ SNMCDLLRIN  RGVML+DG+SRFSI G+P+ HF+GTSTFSEYTVVH GC+AKINP APLDKVC+LSCG+STGLGATLNVAKP++                              VD  S RFEEAKKFGVT+FVN   H++P+QEVIAE+TN GVDRS+ECTG+ + MISAFECVHDGWG+AVLVGVP KDAVF T P+N
Sbjct:   84 TDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRINTDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFGVTEFVNPKAHEKPVQEVIAELTNRGVDRSIECTGSTEAMISAFECVHDGWGVAVLVGVPHKDAVFKTHPVN 311          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 3.990e-86
Identity = 153/228 (67.11%), Postives = 176/228 (77.19%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            +DL  GDHVLPVFTGEC DC HC+S+ SNMC LLRIN  RGVML DG+SRFSING P+ HF+GTSTFSEYTVVH GCVAKINPLAPLDKVC+LSCG+STGLGA+LNVAKP +                              VD ++ RFE+AKKFGVT+FVN  ++ +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWG+AVLVGVP K+AVF T P+N
Sbjct:   84 TDLAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRINTDRGVMLNDGKSRFSINGNPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGASLNVAKPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNASRFEQAKKFGVTEFVNPKDYSKPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKEAVFKTHPLN 311          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 3.378e-85
Identity = 148/228 (64.91%), Postives = 174/228 (76.32%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            +DL  GDHVLPVFTGEC +C HC+S  SNMCDLLRIN  RGVM+ DG+SRFSING+P+ HF+GTSTFSEYTV+H GCVAKINP APLDKVC+LSCG+STGLGAT+NVAKP +                              +D ++ RFEEA+KFG T+FVN  +HD+P+Q+V+AEMTNGGVDRSVECTGNI+ MI AFECVHDGWG+AVLVGVP KDA F T P+N
Sbjct:   83 TDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVNPKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMN 310          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.378e-85
Identity = 148/228 (64.91%), Postives = 174/228 (76.32%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            +DL  GDHVLPVFTGEC +C HC+S  SNMCDLLRIN  RGVM+ DG+SRFSING+P+ HF+GTSTFSEYTV+H GCVAKINP APLDKVC+LSCG+STGLGAT+NVAKP +                              +D ++ RFEEA+KFG T+FVN  +HD+P+Q+V+AEMTNGGVDRSVECTGNI+ MI AFECVHDGWG+AVLVGVP KDA F T P+N
Sbjct:   83 TDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGATINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGIDLNANRFEEARKFGCTEFVNPKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMN 310          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 5.761e-85
Identity = 151/228 (66.23%), Postives = 177/228 (77.63%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            +DL+ GDHVLP+FTGECG+CRHC S+ SNMCDLLRIN  RG M+ DG+SRFSING+P+ HFLGTSTFSEYTVVHSG VAKINP APLDKVCI+SCG+STGLGATLNVAKP++                              VD +SKRF++AK+FGVT+ VN  +HD+PIQ+VIAEMT+GGVDRSVECTG++  MI AFECVHDGWG+AVLVGVPSKD  F T P+N
Sbjct:   83 TDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTERGGMIHDGESRFSINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLSTGLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVTECVNPKDHDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKDDAFKTHPMN 310          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 1.284e-84
Identity = 149/228 (65.35%), Postives = 173/228 (75.88%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            +DL+ GDHVLPVFTGEC +C HC+S+ SNMCDLLRIN  RGVML DG+SRFSI G+P+ HF+GTSTFS YTV H GC+AKINP +PLDKVCILSCG+STGLGATLNV KP++                              VD +S RFEEAKKFG+T+FVN  +H +P+QEVIAE+TNGGVDRS+ECTGNI  MI AFECVHDGWG+AVLVGVP KDAVF T P+N
Sbjct:   84 TDLKAGDHVLPVFTGECKECDHCKSEESNMCDLLRINTDRGVMLNDGKSRFSIKGKPIYHFVGTSTFSVYTVTHVGCLAKINPQSPLDKVCILSCGISTGLGATLNVRKPKKGSTVAVFGLGAVGLAAAEGARMAGASRIIGVDLNSNRFEEAKKFGITEFVNPKDHKKPVQEVIAELTNGGVDRSIECTGNIQAMIPAFECVHDGWGVAVLVGVPHKDAVFTTHPMN 311          
BLAST of GE213272 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.676e-84
Identity = 148/228 (64.91%), Postives = 174/228 (76.32%), Query Frame = 3
Query:   39 SDLEVGDHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFEEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGIAVLVGVPSKDAVFMTKPIN 722
            +D+  GDHVLPVFTGEC +C HC+S  SNMCDLLRIN VRGVM+ DG+SRFSING+P+ HF+GTSTFSEYTV+H GCVAKINP APLDKVC+LSCG+STGLGA++NVAKP +                              VD +  RFEEAKKFG T+FVN  +H++P+QEV+A+MTNGGVDRSVECTGNI+ MI AFECVHDGWG+AVLVGVP KDA F T P+N
Sbjct:   83 TDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTVRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGCTEFVNPKDHNKPVQEVLADMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMN 310          
The following BLAST results are available for this feature:
BLAST of GE213272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
ADH3_SOLTU2.339e-8667.11Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH2_SOLTU2.339e-8667.11Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADH1_SOLTU2.339e-8666.81Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD... [more]
ADH_MALDO3.055e-8666.67Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADH2_SOLLC3.990e-8667.11Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH1_ORYSJ3.378e-8564.91Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI3.378e-8564.91Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
ADH1_ARATH5.761e-8566.23Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH_FRAAN1.284e-8465.35Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]
ADH1_PENAM1.676e-8464.91Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]

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Properties
Property NameValue
Genbank description123 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213272 ID=GE213272; Name=GE213272; organism=Citrus sinensis; type=EST; length=748bp
ATTAGCGTGGTCGCGGCCGAGGTGTTGGGGAAGGTGTTTCAGACCTTGAA
GTAGGGGATCACGTACTCCCGGTATTTACAGGGGAGTGTGGGGATTGTAG
ACACTGCAGGTCGGATGTAAGCAATATGTGTGACCTTTTGAGAATAAACC
CAGTCAGGGGAGTCATGCTTGCTGATGGACAATCTAGGTTTTCCATCAAT
GGGGAGCCTGTAAATCACTTCCTTGGAACATCCACCTTTAGCGAGTACAC
TGTCGTTCATTCAGGCTGCGTTGCAAAGATCAATCCTCTGGCACCTTTGG
ACAAAGTCTGCATTCTCAGTTGTGGCGTCTCAACAGGGCTAGGTGCAACT
CTAAATGTGGCAAAACCTGAAAGGGGTTCGTCAGTCGCTGTCTTTGGCCT
CGGAGCTGTTGGTTTAGCAGCTGCAGAAGGTGCAAGAATTGCTGGAGCAT
CAAGAATTATTGGTGTTGATAGGAGCTCCAAGAGGTTTGAGGAAGCCAAA
AAGTTTGGAGTAACTGATTTTGTCAACACCAGTGAGCACGACAGACCAAT
TCAAGAGGTAATTGCAGAGATGACGAACGGTGGAGTTGACAGAAGTGTGG
AGTGCACCGGCAACATTGATAACATGATCTCAGCCTTCGAGTGTGTTCAT
GATGGATGGGGTATAGCTGTGCTCGTTGGAGTGCCCAGTAAGGATGCAGT
GTTCATGACCAAGCCAATCAATGTACCTGCCCGGGCGGCCGCTCGAAA
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