GE213269

Overview
NameGE213269
Unique NameGE213269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length372
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6033 contig Csv1_Contig6033:713..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213269 vs. ExPASy Swiss-Prot
Match: GP107_MOUSE (Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = -2 
Query:   12 NNRDYLSAGKTILPRIYFLFSLIYFTLAGLWIHVLYRKRLTVFRIHFFMXXXXXXXXXXXLCEAEDKSYIKRTG-SAHGWDVLFYMFSFLKGITLFTLIVLIGTSAA 329
            N   YLSAG+  LP++Y   +L +F    +WIH+L ++R  VF+IH+ M           +  A D  YI   G    GW V++Y+   LKG  LF  I LIGT  A
Sbjct:  249 NPNSYLSAGEIPLPKLYVSMALFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWA 355
[Close]
BLAST of GE213269 vs. ExPASy Swiss-Prot
Match: GP107_HUMAN (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.641e-13
Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = -2 
Query:   12 NNRDYLSAGKTILPRIYFLFSLIYFTLAGLWIHVLYRKRLTVFRIHFFMXXXXXXXXXXXLCEAEDKSYIKRTG-SAHGWDVLFYMFSFLKGITLFTLIVLIGTSAA 329
            N   YLSAG+  LP++Y   +  +F    +WIH+L ++R  VF+IH+ M           +  A D  YI   G    GW V++Y+   LKG  LF  I LIGT  A
Sbjct:  250 NPDSYLSAGEIPLPKLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWA 356
The following BLAST results are available for this feature:
BLAST of GE213269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GP107_MOUSE1.221e-1338.32Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2[more]
GP107_HUMAN4.641e-1337.38Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank description120 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213269 ID=GE213269; Name=GE213269; organism=Citrus sinensis; type=EST; length=372bp
ATTAGCGTGGTCGCGGCCGAGGTGCCGATCAAAACGATCAACGTGAAAAG
CGTGATTCCTTTCAGGAAACTGAACATGTAAAACAAGACGTCCCAGCCGT
GGGCGCTGCCGGTGCGTTTGATGTACGATTTATCTTCGGCCTCGCACAAG
AGGTTCACCGCTTTGAGGACCACGACGGCGAGCATGAAAAAGTGGATGCG
GAAAACAGTGAGTCGTTTCCTGTAAAGGACGTGGATCCAGAGACCGGCGA
GGGTGAAGTAGATTAGGGAGAAGAGGAAATAGATCCTAGGCAGAATCGTC
TTGCCGGCGGAGAGGTAATCGCGATTGTTGGATCTTCCTTCGAGATTGTA
CCTGCCCGGGCGGCGCTCGAAA
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