GE213268

Overview
NameGE213268
Unique NameGE213268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1184 contig Csv1_Contig1184:250..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYA_RICCO (Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.350e-62
Identity = 124/129 (96.12%), Postives = 125/129 (96.90%), Query Frame = -3
Query:   24 VRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEY 410
            VRERNAMLPTIS KDWLDIDFGI EGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEII ASDGAMVARGDLGAQIPLEQVPSAQQ IVQ+CRQLNKPVIVASQLLESMIEY
Sbjct:  270 VRERNAMLPTISSKDWLDIDFGIAEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSAQQNIVQVCRQLNKPVIVASQLLESMIEY 398          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYA_TOBAC (Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 6.985e-60
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = -3
Query:   24 VRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEY 410
            VRERNAMLPTIS KDWLDIDFGI EGVDFIA+SFVKSAEVI HLKSYI AR+RDSDI+VIAKIESIDSLKNLEEII ASDGAMVARGDLGAQIPLEQVPS QQKIVQ+CRQLN+PVIVASQLLESMIEY
Sbjct:  280 VRERNAMLPTISSKDWLDIDFGIAEGVDFIAVSFVKSAEVIKHLKSYIQARARDSDISVIAKIESIDSLKNLEEIIQASDGAMVARGDLGAQIPLEQVPSEQQKIVQICRQLNRPVIVASQLLESMIEY 408          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYG_TOBAC (Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.673e-35
Identity = 73/129 (56.59%), Postives = 100/129 (77.52%), Query Frame = -3
Query:   24 VRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEY 410
            VR ++A LP+I+ KDW DI FG+   VDF A+SFVK A+V++ LK Y+  +S ++DI VI KIES DS+ NL  II ASDGAMVARGDLGA++P+E+VP  Q+ I++ C+ + KPVIVA+ +LESMI++
Sbjct:  247 VRGKSATLPSITEKDWDDIKFGVNNQVDFYAVSFVKDAKVVHELKDYL--KSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEEVPLLQEDIIRRCQSMQKPVIVATNMLESMIDH 373          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYG_RICCO (Pyruvate kinase isozyme G, chloroplastic (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.955e-34
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = -3
Query:   24 VRERNAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIEY 410
            VR ++A LP+I+ KDW DI FG+   VDF A+SFVK A+V++ LK Y+  +  ++DI VI KIES DS+ NL  II ASDGAMVARGDLGA++P+E+VP  Q+ I++ C  + KPVIVA+ +LESMI +
Sbjct:  104 VRGKSARLPSITDKDWGDIKFGVDNQVDFYAVSFVKDAKVVHELKEYL--KRCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEEVPLLQEDIIRRCHSMQKPVIVATNMLESMINH 230          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_DICDI (Pyruvate kinase OS=Dictyostelium discoideum GN=pyk PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.869e-26
Identity = 56/121 (46.28%), Postives = 84/121 (69.42%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP +S KD LDI FG+ + VDFIA SF++ A+ +N ++  +  + +D  I +I+KIE+++ + N  EI+  SDG MVARGDLG ++ +E++  AQ+ IV  C    KPVI A+Q+LESMI+
Sbjct:  188 LPAVSEKDILDIKFGVEQNVDFIAASFIRKADDVNEIREILGEKGKD--IQIISKIENVEGVDNFNEILEVSDGIMVARGDLGVEVQMEKIFVAQKMIVSKCNAAGKPVITATQMLESMIK 306          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK1_SYNY3 (Pyruvate kinase 1 OS=Synechocystis sp. (strain PCC 6803) GN=pyk1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.277e-25
Identity = 55/121 (45.45%), Postives = 88/121 (72.73%), Query Frame = -3
Query:   27 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESMIE 389
            LP+++ KD  D++FG+++G+D++++SFV+  E I+ LK ++A R    D+ VIAKIE   ++ NLEEI+  S+G MVARGDLG ++  E+VP  Q++I++ C     PVI A+Q+L+SMI+
Sbjct:  180 LPSMTTKDKQDLEFGLSQGIDWVSLSFVRKGEDIHTLKQFLAERGHP-DLPVIAKIEKPQAIDNLEEIVAVSNGIMVARGDLGVEVNPEKVPRLQKEIIRRCNVRAIPVITATQMLDSMIQ 299          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_STAS1 (Pyruvate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pyk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.586e-25
Identity = 56/119 (47.06%), Postives = 86/119 (72.27%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            LP I+ KD  DI+FGI+EGVDFIA SFV+    +  ++  + A+ ++ +I++I KIE+ + + N++EI+  SDG MVARGD+G +IP E VP  Q+ +++ C +L KPVI A+Q+L+SM
Sbjct:  167 LPGITDKDADDINFGISEGVDFIAASFVRRPSDVLDIRKLLEAK-QNKNISIIPKIENQEGIDNIKEILEVSDGLMVARGDMGVEIPPESVPMVQKDLIRQCNKLGKPVITATQMLDSM 284          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_MYCPN (Pyruvate kinase OS=Mycoplasma pneumoniae GN=pyk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.296e-25
Identity = 58/119 (48.74%), Postives = 84/119 (70.59%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            +P +S KD  DIDFG+T  +D+IA SFV + E I  L+ Y+A+++    + +IAKIES  +L N++ II ASDG MVARGDLG +IP  +VP  Q+ +++ CR  NK VI A+Q+L+S+
Sbjct:  196 IPFLSAKDLRDIDFGLTHQIDYIAASFVNTTENIKQLRDYLASKNA-KHVKLIAKIESNHALNNIDGIIKASDGIMVARGDLGLEIPYYKVPYWQRYMIKACRFFNKRVITATQMLDSL 313          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_MYCGE (Pyruvate kinase OS=Mycoplasma genitalium GN=pyk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.296e-25
Identity = 57/119 (47.90%), Postives = 84/119 (70.59%), Query Frame = -3
Query:   33 LPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 389
            +P +S KD  DIDFG+++G+D+IA SFV +   I  L+ Y+  ++  S + +IAKIES  +L N+++II ASDG MVARGDLG +IP  QVP  Q+ +++ CR  NK  I A+Q+L+S+
Sbjct:  196 IPFLSEKDLKDIDFGLSQGIDYIAASFVNTVADIKQLRDYLKLKNA-SGVKIIAKIESNHALNNIDKIIKASDGIMVARGDLGLEIPYYQVPYWQRYMIKACRFFNKRSITATQMLDSL 313          
BLAST of GE213268 vs. ExPASy Swiss-Prot
Match: KPYK_BACPY (Pyruvate kinase OS=Bacillus psychrophilus GN=pyk PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.625e-24
Identity = 56/122 (45.90%), Postives = 84/122 (68.85%), Query Frame = -3
Query:   33 NAMLPTISPKDWLDIDFGITEGVDFIAISFVKSAEVINHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIILASDGAMVARGDLGAQIPLEQVPSAQQKIVQLCRQLNKPVIVASQLLESM 398
            +  LP ++ KD  DI FGI EGVDFIA SFV+ A  +  +++ +   +  S++ +I KIE+ + + N++EI+  SDG MVARGDLG +IP E+VP  Q+ +++ C Q  KPVI A+Q+L+SM
Sbjct:  164 SVQLPGMTEKDAEDILFGIREGVDFIAASFVRRASDVMEIRALLE-NNNGSNLQIIPKIENQEGVDNIDEILNVSDGLMVARGDLGVEIPPEEVPLVQKNLIEKCNQAGKPVITATQMLDSM 284          
The following BLAST results are available for this feature:
BLAST of GE213268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
KPYA_RICCO3.350e-6296.12Pyruvate kinase isozyme A, chloroplastic OS=Ricinu... [more]
KPYA_TOBAC6.985e-6091.47Pyruvate kinase isozyme A, chloroplastic OS=Nicoti... [more]
KPYG_TOBAC2.673e-3556.59Pyruvate kinase isozyme G, chloroplastic OS=Nicoti... [more]
KPYG_RICCO2.955e-3455.81Pyruvate kinase isozyme G, chloroplastic (Fragment... [more]
KPYK_DICDI3.869e-2646.28Pyruvate kinase OS=Dictyostelium discoideum GN=pyk... [more]
KPYK1_SYNY34.277e-2545.45Pyruvate kinase 1 OS=Synechocystis sp. (strain PCC... [more]
KPYK_STAS15.586e-2547.06Pyruvate kinase OS=Staphylococcus saprophyticus su... [more]
KPYK_MYCPN7.296e-2548.74Pyruvate kinase OS=Mycoplasma pneumoniae GN=pyk PE... [more]
KPYK_MYCGE7.296e-2547.90Pyruvate kinase OS=Mycoplasma genitalium GN=pyk PE... [more]
KPYK_BACPY1.625e-2445.90Pyruvate kinase OS=Bacillus psychrophilus GN=pyk P... [more]

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Properties
Property NameValue
Genbank description119 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213268 ID=GE213268; Name=GE213268; organism=Citrus sinensis; type=EST; length=430bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCAATCATAGATTCAAGCAACTG
GGAGGCAACAATAACTGGCTTATTCAGCTGCCTGCAAAGCTGAACAATCT
TTTGCTGGGCTGACGGCACCTGCTCCAATGGTATCTGAGCACCCAAATCT
CCTCTGGCAACCATAGCTCCATCTGATGCTAGAATGATCTCTTCCAAGTT
CTTTAAAGAGTCGATACTCTCAATCTTTGCAATGACAGCAATATCACTAT
CACGAGATCGTGCAGCAATATAGCTCTTCAGGTGATTAATTACTTCAGCA
GACTTGACAAATGAAATGGCTATAAAATCAACACCTTCAGTAATTCCAAA
ATCGATGTCCAGCCAATCCTTAGGAGAAATTGTTGGGAGCATAGCATTAC
GCTCTCGTACCTCGGCCGCGACCACGCTAA
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