GE213267

Overview
NameGE213267
Unique NameGE213267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12594 contig Csv1_Contig12594:256..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.598e-45
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            V DA LAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCR+IGFTSADVGLDAD+CKVLVNIEQQSPDIAQGVHGH +KRPEEIGA
Sbjct:   28 VLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRNIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFSKRPEEIGA 121
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.598e-45
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            V DA LAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCR+IGFTSADVGLDAD+CKVLVNIEQQSPDIAQGVHGH +KRPEEIGA
Sbjct:   28 VLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRNIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFSKRPEEIGA 121
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK5_VITVI (S-adenosylmethionine synthetase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.649e-45
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            V DA LAQDPDSKVACETCTKTNMVMVFGEITTKAD+DYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA
Sbjct:   27 VLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADIDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 120
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.649e-45
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            V DA LAQDPDSKVACETCTKTNMVMVFGEITTKA++DYEKIVRDTCRSIGF SADVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPE++GA
Sbjct:   27 VLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANIDYEKIVRDTCRSIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEDVGA 120
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.072e-45
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            V DA LAQDP+SKVACETCTKTNMVMVFGEITTKA+VDYEKIVRDTCRSIGFTS DVGLDAD CKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA
Sbjct:   27 VLDACLAQDPESKVACETCTKTNMVMVFGEITTKAEVDYEKIVRDTCRSIGFTSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 120
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.930e-45
Identity = 88/94 (93.62%), Postives = 88/94 (93.62%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            V DA LAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGF S DVGLDAD CKVLVNIEQQSPDIAQGVHGH TKRPEEIGA
Sbjct:   27 VLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 120
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.930e-45
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            + DA L QDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR IGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTK+PEEIGA
Sbjct:   27 ILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.930e-45
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            + DA L QDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR IGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTK+PEEIGA
Sbjct:   27 ILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.930e-45
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            V DA LA+DPDSKVACETCTKTNMVMVFGEITTKA+VDYEKIVR+TCR+IGF SADVGLDADHCKVLVNIEQQSPDIAQGVHGH TKRPEEIGA
Sbjct:   30 VLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
[Close]
BLAST of GE213267 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 7.930e-45
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = -2 
Query:    1 VQDARLAQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 282
            V DA LA+DPDSKVACETCTKTNMVMVFGEITTKA+VDYEKIVR+TCR+IGF SADVGLDADHCKVLVNIEQQSPDIAQGVHGH TKRPEEIGA
Sbjct:   30 VLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 123
The following BLAST results are available for this feature:
BLAST of GE213267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_POPDE1.598e-4593.62S-adenosylmethionine synthetase OS=Populus deltoid... [more]
METK3_POPTR1.598e-4593.62S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK5_VITVI4.649e-4592.55S-adenosylmethionine synthetase 5 OS=Vitis vinifer... [more]
METK2_SUASA4.649e-4591.49S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK2_BETVU6.072e-4593.62S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]
METK_CARPA7.930e-4593.62S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK2_TOBAC7.930e-4591.49S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK1_PETHY7.930e-4591.49S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK1_ORYSJ7.930e-4591.49S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI7.930e-4591.49S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank description118 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213267 ID=GE213267; Name=GE213267; organism=Citrus sinensis; type=EST; length=304bp
AGCACCAATCTCCTCAGGCCGCTTTGTGAGATGCCCATGAACACCCTGAG
CAATGTCAGGGCTCTGCTGCTCAATATTAACAAGAACTTTGCAGTGATCA
GCATCAAGCCCCACATCGGCCGATGTGAACCCAATCGATCTGCATGTATC
ACGCACGATTTTCTCGTAATCCACATCGGCCTTGGTTGTAATTTCTCCAA
AAACCATGACCATGTTGGTCTTTGTGCATGTTTCACAAGCAACTTTGCTG
TCAGGATCCTGAGCCAAACGCGCGTCCTGTACCTGCCCGGGCGGCCGCTC
GAAA
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