GE213257

Overview
NameGE213257
Unique NameGE213257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GE213257_ssr418 microsatellite GE213257_ssr418:418..429. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2677 contig Csv1_Contig2677:193..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213257 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSJ (Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.123e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = -1 
Query:  110 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXELQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 490
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
[Close]
BLAST of GE213257 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSI (Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.123e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = -1 
Query:  110 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXELQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 490
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
The following BLAST results are available for this feature:
BLAST of GE213257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRS1_ORYSJ2.123e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
SRS1_ORYSI2.123e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank description107 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213257 ID=GE213257; Name=GE213257; organism=Citrus sinensis; type=EST; length=514bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTACTACTTGTTGTCTCTTGTTCT
GGTTTTGTTTCTTCTCCTGCTGCCGCGGTTGCTGGCTCTGCTGCTTTTTC
TTCAGTAACAATAAACGTTGAGACCTTCTCAAATATGAAGAAAACTGGCC
CCGGAACAGAGGCTGCCCCAAACTTTGACGATGCTTCACTTACTGCTTTT
GATCCTGGAAACTCGATTTTAACGAGTTCTTCAAGTAACTTGTGCACAGC
AGTGGAGTGCTTCTTAAGTCCATCCTCCTTGCGATCCTTGACCAGGGTCT
TGATTTCAGCTGAAGAAGCTTCATAGATTTCGACCACTTTAGGTTGGAGC
TCAGGCTTCTTCTCTTCAAACTCTTTATTGATTTCTTCCTTTGAATCATC
AAAGGACTTGCAAGCCTCAGCAGCAGCAGCTTTCTTGGTTCCGTTTTTCT
CGAAAACTTTCTTGATCCTTGGGAGGACCTTGGATTTCCAGTACCTCGGC
CGCGACCACGCTAA
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