EY755130

Overview
NameEY755130
Unique NameEY755130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755130 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 52/125 (41.60%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   34 MASISSTNFPALLPRSGFVPKGLT--HASPVYGMPAMATTRGRVRCSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIY 402
            MA+I++++  +L+ R+  V        +SP+ G+P+M T R +V CS+                                      VDERM+TEGTGLPFGLSNN LGWILFGVFGLIWALYF+Y
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSM-TKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMAL-VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVY 123          
BLAST of EY755130 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.713e-16
Identity = 51/123 (41.46%), Postives = 61/123 (49.59%), Query Frame = 1
Query:   37 ASISSTNFPALLPRSGFVPKGLTHASPVYGMPAMATTRGRVRCSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 405
            AS  S   PALL     +   +  ++PV G+P M   +G VRCS+                                      VDERM+TEGTGLPFGLSNN LGWILFGVFGLIW  +F+YT
Sbjct:    8 ASTVSAARPALL-----LKPTVAISAPVLGLPPMGKKKGGVRCSMETKQGNVSVMGAGVSAAATAALTAVMSNPAMAL-----VDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYT 120          
BLAST of EY755130 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  286 VDERMTTEGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 405
            VDERM+TEGTGL  GLSNN LGWIL GVFGLIW+LY IYT
Sbjct:   71 VDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYT 110          
The following BLAST results are available for this feature:
BLAST of EY755130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL3.264e-1741.60Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH4.713e-1641.46Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.419e-1282.50Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-024-D06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755130 ID=EY755130; Name=EY755130; organism=Citrus sinensis; type=EST; length=587bp
AATCTACTTACTTGCAGGAGGGAAAAAAAAAAAATGGCATCAATTTCATC
AACCAACTTTCCTGCATTGCTTCCAAGATCAGGTTTTGTGCCCAAGGGCT
TAACTCACGCATCACCAGTCTATGGAATGCCTGCAATGGCAACAACAAGG
GGACGTGTGAGATGCAGCTTAAAGGAAAAGGCACCAGCTGCTGCCAGCGG
CAAGAGCTCAAAAGCAAGCATGGTTGCATCACTTATGGCAGCCGCCGCAG
CCTTGAGTACGGCCGCAGGGCCAGCCATGGCGTTGGTGGATGAGAGAATG
ACCACAGAAGGAACAGGGCTTCCATTTGGACTAAGCAACAACACTCTTGG
GTGGATTCTCTTTGGTGTGTTTGGATTGATTTGGGCTCTCTATTTTATTT
ACACTGGCGATCTTGAAGAAGATGAAGAGTCTGGCTTGTCCCTTTGAATT
AAGGGTTATTTAAACTTAGGCTTGTTGAATTTATTAATGCCCTCTTGTTA
AAGAACTGGAAAACCTTTAAATCAACCAAAGAAAAGCTTTTGGCTCTTGA
ATTTTGTGTNNNAAAAAAAAAAAAAAAAAAAAAAAAA
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