EY729059

Overview
NameEY729059
Unique NameEY729059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_ARATH (3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.237e-89
Identity = 155/212 (73.11%), Postives = 182/212 (85.85%), Query Frame = 1
Query:  166 SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TTGSVK  MT+TEKI ARASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKVWD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLG FKANPDYKGVCH+ALAQ+GHCRPGEVLLGTDSHTCTAGAFG FA
Sbjct:    2 ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTTGSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKVWDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFA 212          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_METJA (Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii GN=leuC PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.536e-31
Identity = 72/146 (49.32%), Postives = 92/146 (63.01%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+ EKI A+AS K ++SPGD V  N+D+ M HD+ GP +    K E+G   KVW+ EKIVI+ DH +     +A  N  ++R F  EQ IKYFYDI++           GVCH  L +KGH  PGEV++G DSHTCT GAFG FA
Sbjct:    3 MTIVEKILAKASGKKEVSPGDIVMANIDVAMVHDITGPLTVNTLK-EYGIE-KVWNPEKIVILFDHQVPADSIKAAENHILMRKFVKEQGIKYFYDIRE-----------GVCHQVLPEKGHVAPGEVVVGADSHTCTHGAFGAFA 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC1_METTH (3-isopropylmalate dehydratase large subunit 1 OS=Methanobacterium thermoautotrophicum GN=leuC1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.878e-29
Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  361 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            +MT++EKI ARAS K ++  G+ V  ++D+ MTHD+ GP S   F+   GE+ +VWD EKIV+I DH +      A +N  I+RDF  EQ I+ FYD+++           GVCH  L +KGH  PGEV++GTDSHTCT GA G FA
Sbjct:    2 SMTVSEKILARASGKDRVEAGEIVMADIDVAMTHDLTGPLSVESFRA-IGED-RVWDPEKIVVIFDHQVPADSIEAAQNHMIMRDFVEEQGIRNFYDVRE-----------GVCHQVLPEKGHVVPGEVVVGTDSHTCTHGALGAFA 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC1_METKA (3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri GN=leuC1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.165e-25
Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  367 TLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            T+ EKI +RAS +     GD V  N+D+ M HD+ GP    + + E     +VWD  KIV++ DH +      A  N  I+R+F  EQ I++FYD+++           GVCH  L +KGH RPG+V++G DSHTCT GA G FA
Sbjct:    4 TMAEKILSRASGE-DAEAGDIVVANIDVAMVHDITGP--ITVQRLEEMGVERVWDPSKIVVLFDHQVPADSVEAAENHKIMREFVEEQGIEHFYDVRE-----------GVCHQVLPEKGHVRPGDVIVGADSHTCTHGALGAFA 134          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC2_METMA (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei GN=leuC2 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.066e-24
Identity = 65/150 (43.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGP----GSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT++EKIF++AS  P +  GD V  N+D+ MTHD+ GP    G + I + E  E+ KVWD  KIVII DH +      A +N  +LR F  EQ I   YD+           Y+GVCH  L +KGH +PG++++G+DSHTC  G+ G F+
Sbjct:    1 MTVSEKIFSKASGTP-VKAGDFVLANIDLAMTHDITGPLAVQGFYEIMRDE--EDKKVWDPSKIVIIFDHQVPADSINAAQNHIMLRKFAKEQGILN-YDV-----------YEGVCHQVLPEKGHVKPGDLIVGSDSHTCAYGSLGAFS 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC2_METAC (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans GN=leuC2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.293e-24
Identity = 65/150 (43.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGP----GSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT++EKIF++AS  P +  GD V  N+D+ MTHD+ GP    G + I + E  E  KVWD  KIVII DH +      A  N  +LR F  EQ I   YD+           Y+GVCH  L +KGH  PG++++G+DSHTC  G+ G F+
Sbjct:    1 MTVSEKIFSKASGTP-VKAGDFVLANIDLAMTHDITGPLAVQGFYEIMRDE--EEKKVWDPSKIVIIFDHQVPADSINAAENHIMLRKFAKEQGILN-YDV-----------YEGVCHQVLPEKGHVLPGDLIVGSDSHTCAYGSLGAFS 135          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_SYNAS (3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.304e-22
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+TEKI  R ++  ++ PG  +   VDI + +DV  P +   F+K  G+  KV+DR+K+V+IPDH+    D  +     I+RDF  EQ I ++Y++ ++          GV H  L +KG   PG++++G DSHTCT GA G FA
Sbjct:    3 MTITEKILCRHTDLDEVRPGMLINAKVDIALGNDVTAPLAIDEFRKAGGK--KVFDRDKVVLIPDHFTPNKDINSAAQCKIMRDFAREQEITHYYEVGEV----------GVEHALLPEKGIVLPGDLVIGADSHTCTYGALGAFA 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC_DESAA (3-isopropylmalate dehydratase large subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=leuC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.459e-21
Identity = 53/146 (36.30%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            MT+ EKI A  + + + SPGD +   VDI + +D+  P +  +F++     AKV+D++++V++PDH+  T D  +   V ++RDF  EQ + ++Y+  D           GV H  L +KG   PG++++G DSHTCT G  G FA
Sbjct:    3 MTIAEKILAAHAGQEEASPGDLINAKVDIALGNDITAPIAIKLFRQSGA--AKVFDKDRVVLVPDHFTPTKDINSAMQVKMVRDFAREQELSHWYEGGD----------SGVEHALLPEKGIVGPGDLVIGADSHTCTYGGLGAFA 136          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC2_METTH (3-isopropylmalate dehydratase large subunit 2 OS=Methanobacterium thermoautotrophicum GN=leuC2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.550e-20
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  364 MTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKK--EFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            M +TEKI A A+   +++PG+ +   VD+ MTHD   P +   F+     G  A+VWD E+IV++ DH +  +   A     + R+F  EQ I   +            +  G+CH  L ++G  RPG V++G DSHTCT GAFG FA
Sbjct:    4 MNMTEKILAEAAGLREVTPGEIIEARVDLAMTHDGTSPPTIRTFRDIASRGGPARVWDPERIVMVFDHNVPANTIGAAEFQRVTREFAREQGIVNIFQ-----------NAAGICHQVLPERGFVRPGMVIVGADSHTCTYGAFGAFA 140          
BLAST of EY729059 vs. ExPASy Swiss-Prot
Match: LEUC1_ARCFU (3-isopropylmalate dehydratase large subunit 1 OS=Archaeoglobus fulgidus GN=leuC1 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.637e-20
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  361 AMTLTEKIFARASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGYFKANPDYKGVCHIALAQKGHCRPGEVLLGTDSHTCTAGAFGPFA 801
            A TL EKIF++AS K ++  G+ V  N+D+ M HD+  P +   F++  G +AKVWD+ K+++  DH +      A  N  +LR F  EQ I   YD+K            G+ H  + +  H  PG +++G DSHTC  GA G FA
Sbjct:    2 AQTLVEKIFSKASGK-EVKAGEFVMANIDLAMIHDITAPLAIKAFREILGSDAKVWDKSKVIMAFDHQVPADSVHAAENHKMLRKFAEEQGI-LNYDVKG-----------GIAHQIMVE-NHVEPGMLIVGADSHTCMYGALGAFA 134          
The following BLAST results are available for this feature:
BLAST of EY729059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LEUC_ARATH1.237e-8973.113-isopropylmalate dehydratase OS=Arabidopsis thali... [more]
LEUC_METJA1.536e-3149.32Isopropylmalate/citramalate isomerase large subuni... [more]
LEUC1_METTH1.878e-2947.623-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC1_METKA8.165e-2542.073-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC2_METMA1.066e-2443.333-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC2_METAC5.293e-2443.333-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_SYNAS1.304e-2239.043-isopropylmalate dehydratase large subunit OS=Syn... [more]
LEUC_DESAA2.459e-2136.303-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC2_METTH3.550e-2037.163-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC1_ARCFU4.637e-2037.413-isopropylmalate dehydratase large subunit 1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-A08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729059 ID=EY729059; Name=EY729059; organism=Citrus sinensis; type=EST; length=838bp
CCACGCGTCCGTGATTTTTTATATTGTTTGTGATCAAACTTTCTCTCAGC
CGCCGCCGCCACTTTCTTAGGAAACAAACTAAATTTAGACACTCTTAAAT
CTTAATCCCTACAGAACAAACCAAACCAAAAAAAAACAGGCCTCTTGTAG
CAAATAAACATGGCTTCCTCTGTCATTTCCCCAGCTCCAACATCTTCTTT
CATCAACAACAAGAAGGATTTGGGTAGCTTTTGTTTTTCGTCGACATCAC
AATTTTCAGTCAACAAATGCAAGAAATTGGCAGTCTCCAAGAAAATTGTG
TCGGTCATGGCACCTCAGCAATCAGAACGCCGGCCTGCCACCACTGGCTC
GGTAAAAAATGCGATGACGTTGACGGAGAAGATATTTGCCAGGGCTTCAG
AGAAACCCCAGTTGAGCCCGGGAGACAATGTGTGGGTTAATGTTGATATC
TTGATGACCCACGATGTTTGTGGCCCCGGCTCCTTTGGTATCTTTAAAAA
AGAGTTTGGTGAAAATGCTAAGGTTTGGGACCGTGAAAAGATTGTCATTA
TACCTGATCATTATATATTCACAAGTGATGAACGTGCAAATCGTAATGTG
GATATCCTGAGGGATTTCTGCATGGAGCAGAATATCAAGTACTTTTATGA
TATTAAAGATCTTGGGTACTTTAAGGCTAACCCGGATTATAAAGGCGTAT
GTCATATTGCACTTGCCCAAAAAGGCCATTGCAGGCCTGGAGAGGTCTTG
CTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCCATTTGC
ACTGGCATGGGCACACTGATGCAGGTTTATATTGGGCA
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