EY729058

Overview
NameEY729058
Unique NameEY729058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 2.569e-99
Identity = 183/267 (68.54%), Postives = 205/267 (76.78%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFKLL----DLMRIXXXXXXXXXXXXC*KKSA*KGHSRRGDDVEPLXXPDSLXPGSXIHGSRLASGPFSSPY 850
            +NVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLIML LATHEVHFSILREVV+TPGQQ++CFLCGQ GH A+NCEGK K++AGE DEKGD     KKPYQFLHIW LREYL+ E RIPNPPFEIDLE IVDDFIF+CFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFR+  GYLTDG KP+L+RVE   + +    D +                +  A K  ++R DD  P   PD L P +   GSRLAS P  SP+
Sbjct:  198 ANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKKPYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQRQAERVKRDKAGKA-TKRMDDEAPTVQPD-LVPVARFSGSRLASAPTPSPF 462          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.180e-81
Identity = 141/198 (71.21%), Postives = 162/198 (81.82%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFK 655
            SNVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLIML+LATHEVHFSILREV+  PGQQ+KCF+CGQ GH A++C GK+       D     + + KK YQFL+IW LREYL YE  IP+PPF I+ E I+DDF+F+CFFVGNDFLPHMPTLEIREGAINLLM VY+KEF A+GGYLTD  +  L RVEH  +
Sbjct:  199 SNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAAD-----IPIHKKKYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQ 391          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.942e-77
Identity = 134/202 (66.34%), Postives = 164/202 (81.19%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHLFKLLDL 667
            +NVPGEGEHKIMSY+R  +N PGY+PNT HCLYGLDADLIML+LATHE+HFSILREVVF PG++ KCFLCGQ GH AA+CEGK KRK GE  +  +  VV KKPY+F++IW LREYL+++ +IP    + +L+ ++DDFIF+CFFVGNDFLPHMPTLEIREGAI LLM+VYK +FR+   YLTD SK +LR VE   K + +
Sbjct:  200 ANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIMLSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVVKKPYEFVNIWILREYLEHDMQIPGA--KKNLDRLIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGM 399          

HSP 2 Score: 26.1794 bits (56), Expect = 1.942e-77
Identity = 17/52 (32.69%), Postives = 24/52 (46.15%), Query Frame = 1
Query:  646 FIQAVGSYEDRIF------------RXEHDSIRDMLKEISVKRAQQKRR*CG 765
            FI+AVG YE++IF            R   D  RD  ++ +   AQ  R+  G
Sbjct:  393 FIKAVGMYENQIFQKRAQVQQRQSERFRRDKARDKARDNARDNAQASRQFSG 444          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_CHAGB (5'-3' exoribonuclease 2 OS=Chaetomium globosum GN=RAT1 PE=3 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 2.126e-61
Identity = 116/197 (58.88%), Postives = 138/197 (70.05%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHL 649
            + VPGEGEHKIM +VR QRN P +DPNTRH +YGLDADLIML LATHE HF +LRE V F  G+   C LCGQ GH   NC G+AK KAGEFDEK  +   P KP+ +LH+  LREYL  E  IPN PF  DLE  +DD++FMCFFVGNDFLPH+P LEIRE  I  LMA++K     +GGY+T      L R +++
Sbjct:  205 ATVPGEGEHKIMEFVRSQRNSPEHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQQGKARMCKLCGQKGHDERNCRGEAKEKAGEFDEK--DKAEPLKPFIWLHVSILREYLAIELNIPNLPFRWDLERAIDDWVFMCFFVGNDFLPHLPALEIRENGIETLMAIWKDNLPVMGGYVTKDGHVDLDRAQYI 399          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_NEUCR (5'-3' exoribonuclease 2 OS=Neurospora crassa GN=rat-1 PE=3 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 2.777e-61
Identity = 113/197 (57.36%), Postives = 141/197 (71.57%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHL 649
            + VPGEGEHKIM +VR QR  P +DPNTRH +YGLDADLIML LATHE HF +LRE VF    + + C +CGQ GH A NC+G+AK K GEFDEK  + VVP KP+ +LH+  LREYL  E  +P  PF+ +LE  +DD++FMCFFVGNDFLPH+P LEIRE  I+ L A++K     +GGYLT      L RV+++
Sbjct:  204 ATVPGEGEHKIMEFVRSQRGSPNHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFAQDSRPRLCKICGQKGHDAMNCKGEAKEKNGEFDEK--DAVVPLKPFIWLHVSILREYLAIELDVPGLPFQFNLERAIDDWVFMCFFVGNDFLPHLPALEIRENGIDTLTAIWKDNLPVMGGYLTKDGHADLERVQYI 398          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_USTMA (5'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1 PE=3 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 8.933e-60
Identity = 111/195 (56.92%), Postives = 145/195 (74.36%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 643
            ++VPGEGEHKIM ++R QR+ P +DPNT+H +YGLDADLIML+LATHE +F +LRE VF    + K C LCGQPGH AA+C G AK+K+G+ DE        KKP+ FL + TLREYL+ E  IP  PF  DLE  +DD++F+ FFVGNDFLPH+P+LEIR+GAI+ L+ ++KKE  A+GGYLT+  +  L R +
Sbjct:  205 ASVPGEGEHKIMEHIRRQRSHPEHDPNTKHVIYGLDADLIMLSLATHEPYFKVLREDVFAADNKPKTCNLCGQPGHFAASCTGAAKKKSGQHDEIAP-TPPEKKPFIFLDVATLREYLEVELNIPQLPFAFDLERAIDDWVFLIFFVGNDFLPHLPSLEIRDGAIDTLLRIWKKELPAMGGYLTNHGRVELGRAQ 398          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_EMENI (5'-3' exoribonuclease 2 OS=Emericella nidulans GN=rat1 PE=3 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 5.790e-59
Identity = 108/195 (55.38%), Postives = 138/195 (70.77%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 643
            + VPGEGEHKIM ++R QR  P +DPN RH +YGLDADLIML LATHE HF +LRE V F   +Q  C LCGQPGH A  C G+AK K GEFDEKG    +  KP+ +LH+  LREYL  E  +P+ PF  DLE  +DD++FMCFFVGNDFLPH+P+L+IRE  I+ L+A+++     +GGYLT   +  L++ +
Sbjct:  202 ATVPGEGEHKIMEFIRSQRASPEHDPNARHVIYGLDADLIMLGLATHEPHFRVLREDVFFQESKQRTCHLCGQPGHKAEECRGQAKEKNGEFDEKGKGATL--KPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLDIREDGIDTLIAIWRDNIPLMGGYLTQDGRVDLKKAQ 394          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_ASPFU (5'-3' exoribonuclease 2 OS=Aspergillus fumigatus GN=rat1 PE=3 SV=4)

HSP 1 Score: 221.861 bits (564), Expect = 4.150e-57
Identity = 107/195 (54.87%), Postives = 136/195 (69.74%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 643
            + VPGEGEHKIM ++R QR  P +DPNTRH +YGLDADLIML LATHE HF +LRE V F   +   C LCGQ GH A  C G+AK K GEFDEK     +  KP+ +LH+  LREYL  E  +P+ PF  DLE  +DD++FMCFFVGNDFLPH+P+L+IRE  I+ L+A+++     +GGYLT+     L+R +
Sbjct:  203 ATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQESRARTCHLCGQQGHKAEECRGQAKEKNGEFDEKQKGSSL--KPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHVDLKRAQ 395          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_GIBZE (5'-3' exoribonuclease 2 OS=Gibberella zeae GN=RAT1 PE=3 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.577e-56
Identity = 110/195 (56.41%), Postives = 134/195 (68.72%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 643
            + VPGEGEHKIM++VR QR  P +DPNTRH +YGLDADLIML LATHE HF +LRE VF   Q+ + C +CGQ GH A NC G+ K+K GE DEK   V +  KP+ +LH+  LREYL  E  +PN PF  DLE  VDD+IFMC FVGNDFLPH+P LEIRE  I+ L  ++K     +GGY+T      L R +
Sbjct:  204 ATVPGEGEHKIMNFVRSQRASPDHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQDQKARLCKICGQKGHDAQNCRGEEKKKDGEHDEKDKGVAL--KPFIWLHVAVLREYLAVELGVPNLPFRFDLERAVDDWIFMCCFVGNDFLPHLPALEIREHGIDTLTKIWKDNLPVMGGYVTKDGHIDLERAQ 396          
BLAST of EY729058 vs. ExPASy Swiss-Prot
Match: XRN2_ASPOR (5'-3' exoribonuclease 2 OS=Aspergillus oryzae GN=rat1 PE=3 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 3.513e-56
Identity = 105/195 (53.85%), Postives = 135/195 (69.23%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 643
            + VPGEGEHKIM +VR QR  P +DPNTRH +YGLDADLIML LATHE HF +LRE V F   +   C LCGQ GH A  C G+AK K G+FDEKG    +  KP+ +L++  LREYL  E  +P+ PF  DLE  +DD++FMCFFVGNDFLPH+P+L+IRE  I+ L+A+++     +GGYLT       ++ +
Sbjct:  201 ATVPGEGEHKIMEFVRSQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQESKARTCHLCGQAGHKAEECRGQAKEKNGQFDEKGKGTSL--KPFIWLNVSILREYLAVELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTKDGHVEFKKAQ 393          
The following BLAST results are available for this feature:
BLAST of EY729058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
XRN3_ARATH2.569e-9968.545'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN... [more]
XRN4_ARATH9.180e-8171.215'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
XRN2_ARATH1.942e-7766.345'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN... [more]
XRN2_CHAGB2.126e-6158.885'-3' exoribonuclease 2 OS=Chaetomium globosum GN=... [more]
XRN2_NEUCR2.777e-6157.365'-3' exoribonuclease 2 OS=Neurospora crassa GN=ra... [more]
XRN2_USTMA8.933e-6056.925'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1... [more]
XRN2_EMENI5.790e-5955.385'-3' exoribonuclease 2 OS=Emericella nidulans GN=... [more]
XRN2_ASPFU4.150e-5754.875'-3' exoribonuclease 2 OS=Aspergillus fumigatus G... [more]
XRN2_GIBZE1.577e-5656.415'-3' exoribonuclease 2 OS=Gibberella zeae GN=RAT1... [more]
XRN2_ASPOR3.513e-5653.855'-3' exoribonuclease 2 OS=Aspergillus oryzae GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-A07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729058 ID=EY729058; Name=EY729058; organism=Citrus sinensis; type=EST; length=921bp
CACGCGTCCGCACTGAAAGAATTATCCAAGCTTTAAGGGGTATAACCGTC
CCACCGTCCTCTCAAATGTTCCTGGTGAAGGGGAACACAAGATTATGTCA
TACGTTCGCCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACTCGCCA
TTGCTTGTATGGTTTGGATGCGGATCTGATTATGTTGGCTTTGGCAACGC
ATGAAGTTCATTTTTCAATCCTTCGAGAGGTTGTATTTACTCCTGGACAG
CAAGACAAATGCTTTCTTTGTGGTCAGCCTGGTCATCTGGCTGCCAATTG
TGAAGGAAAGGCGAAGAGAAAGGCAGGAGAATTTGATGAAAAAGGGGATG
AGGTCGTTGTGCCTAAAAAGCCCTATCAGTTTCTCCACATATGGACCCTT
AGAGAATATCTGGACTACGAGTTCAGAATTCCTAATCCTCCATTTGAGAT
CGACTTAGAATGCATTGTGGATGATTTTATCTTTATGTGTTTCTTTGTTG
GCAATGACTTTTTGCCGCATATGCCAACATTGGAGATTCGTGAGGGTGCA
ATCAACTTGTTGATGGCAGTTTACAAGAAGGAATTTAGGGCTTTGGGCGG
GTACTTGACTGATGGAAGCAAGCCAAGTCTGCGCCGGGTGGAGCATTTAT
TCAAGCTGTTGGATCTTATGAGGATAGAATATTCCGAANAGAGCACGACT
CCATCAGAGACATGCTGAAAGAAATCAGCGTGAAAAGGGCACAGCAGAAG
AGGAGATGATGTGGAGCCCCTANCCCANCCTGATTCCTTANTTCCTGGTT
CTCNGATTCATGGTTCTCGTCTTGCTTCAGGGCCCTTCTCTTCACCATAT
CANCAAAGTGCTTGTGTTGGCAGGCTTAAATACGGTAAAGGAACTTCCGG
TCGCCCCATAAAGTCCTCGTT
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