EY729054

Overview
NameEY729054
Unique NameEY729054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY729054 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.155e-35
Identity = 92/193 (47.67%), Postives = 110/193 (56.99%), Query Frame = 1 
Query:   46 MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTHKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPHELVSQQQQLITADLTSIIVQLISTAGSLLPSMKHTLSAATLPGTAGHQSGGVRF 621
            M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P  QE                       Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+LQDLVHL+VGR  Q+ GR  EL +QQQQLIT DLTSII+QLISTAGSLLPS+KH +S  T PG    Q G   F
Sbjct:    1 METEDDLCNTNWGSSSSKSREPGSS-DCGNSTFAGFTSQQ---KWEDASILDYEMGVEPGLQE---------------------SIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSVKHNMS--TAPGPFTGQPGSAVF 166
The following BLAST results are available for this feature:
BLAST of EY729054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STOP1_ARATH1.155e-3547.67Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-012-A01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729054 ID=EY729054; Name=EY729054; organism=Citrus sinensis; type=EST; length=905bp
TCGACCACGCGTCCGGGATCTGGTACCTGAGAAAAGGATTTTGAAATGGA
TCTTAAAGAGGGACTGCGTGCAGAGACTTGGGCGAAGTCTTCTTTGGCTG
AAAATGAGATGTCAAAAAGGATTTCGTCTAATAACCCATGTTTTACCGAT
TTCAATTCACAGCAATACCAGCAGAAGTGGGAAGATCCCTCCATCTTAGA
TTATGACATTAGGATCAATCCAGCATTTCAAGAATTCAATCAACCTCCTC
AAAACCAATCCTCACTCCCTTGTGACCCCACTAACCAAATTAAAAATCCA
TTCCAGATGAATGAGAATCTCCAAACCCACAAAATGCAAGATTGGGATCC
CAAAGCAATGCTAAATAATCTTTCATTTTTGGAACAAAAGATCCATGAGC
TTCAGGATTTGGTGCACTTAATTGTGGGCCGGAGGAGCCAAATTTTGGGT
CGACCACATGAACTTGTATCTCAGCAGCAGCAGCTCATTACTGCAGATCT
CACTTCAATTATTGTGCAGTTAATCTCCACAGCTGGTAGTCTTCTCCCAT
CCATGAAGCATACCCTCTCTGCAGCTACCCTTCCTGGGACAGCTGGGCAT
CAGTCGGGGGGGGTTCGTTTCCTCCAGCGGCTGGCTTAAGTGAATACATC
ACGTGCGAAATAGTTTGCACAAAAAGGTTTTATCTGTGCAACCCCCCGAT
CTAATCGGTGTATTGGGGGGCACCCACCCACCCTTGCTGTGAAGGAGCTT
GATTATGAGACAGATATTTTGCTTTGTGTGGGAGGGAGTCCGCCCGTTTC
GTGCTGGTTTTTACCNGAGAAAGAAAGAATTCTGGCCTCCCACCCCCCTT
TCGCCTGTGTGGCCAAGGTTAAAGAGGGTGCAGTTGGCGGGTCCGTAGAG
GGGGG
back to top