EY729044

Overview
NameEY729044
Unique NameEY729044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729044 vs. ExPASy Swiss-Prot
Match: NCA2_DICDI (Nuclear control of ATPase protein 2 OS=Dictyostelium discoideum GN=nca2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 52/195 (26.67%), Postives = 106/195 (54.36%), Query Frame = 3
Query:   30 PRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEI--------VMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANENHFAVLAALPAFFSLYL 590
            P    R WV  + G+V + F   +     S       +    + +D+ + F+++H+E+PLL+I + +   + K+   + +   +Q + +SL RM++ ++       +    + Q + ++        +M  YE  +  P+QN++ G++ R +LIQ+QK K+D++ AM+ +D++L+ANE +F +LAA+P+   L L
Sbjct:  573 PNVFIRNWVKLSVGSVIVFFGIKY-----SYDNFDSFKQSAFDIRDAFIRFYHEHLEEPLLNIWNVI--RYDKKSLQLADPASLQSSIDSLGRMVIDYNIDRNHLDINSTETRQHLFQLASRGDISSIMKSYESNIRSPLQNILFGDMIRLILIQIQKEKVDVDKAMVAIDKLLQANELNFQLLAAIPSAIFLAL 760          
BLAST of EY729044 vs. ExPASy Swiss-Prot
Match: NCA2_SCHPO (Nuclear control of ATPase protein 2 OS=Schizosaccharomyces pombe GN=nca2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.081e-15
Identity = 51/192 (26.56%), Postives = 92/192 (47.92%), Query Frame = 3
Query:   27 KPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEM----LEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANENHFAVLAALPAFFSLYL 590
            +P  I R W       + ++  S WL         + +  WI     + V F+ + +++P+L I D +          +++ + ++    SL RM++ F   T    +  +   QE+    L  V+  YE +L  PI+  V+G L R LLIQ+QK K+D+E A+  +D++L++ E  FA +   P+    Y+
Sbjct:  279 RPSAIERNWPK-----IFVTLLSAWLSTQIITKNRTSIRLWIDYLYSTAVDFYTNWIQKPILGIFDTIRSNRADSQITLLQTKSLESDMESLQRMVIDFVSDTSPAGINLDLVKQEVQQGDLTYVLQAYEHDLKTPIRTAVSGNLVRTLLIQLQKTKVDVEVALSGIDRLLKSQELVFATVGITPSLIFCYV 465          
The following BLAST results are available for this feature:
BLAST of EY729044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCA2_DICDI8.448e-1726.67Nuclear control of ATPase protein 2 OS=Dictyosteli... [more]
NCA2_SCHPO2.081e-1526.56Nuclear control of ATPase protein 2 OS=Schizosacch... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-H02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729044 ID=EY729044; Name=EY729044; organism=Citrus sinensis; type=EST; length=862bp
CACGCGTCCGGGTTGCTAAACACCAAAAGCCAAGGAAGATAACTCGATAT
TGGGTCCATTACACTTGTGGAGCTGTTGGCTTATCATTTTGTTCTATTTG
GCTACTACGGCATAGTAGTTTAATGGGTAGTTCTGATCTTGAGAATTGGA
TTTGTGAAGCAAAGGACTCAATGGTTGGCTTCTTCAATGACCATGTAGAG
CAACCGCTTCTGTCAATTAGAGATGAACTATTTGAGACATTTAGGAAAAG
GCACAAAGGAGTGATGGAGGTTGAAGAGGTACAGATGACTTCAAATTCTT
TGCACAGGATGTTATTGGCTTTTAGTGAGCAGACTAAAGGTCAAAAGCTC
CCAGAGAATGCATCAGATCAGGAAATGCTTGAAATAGTTATGTCCAGGTA
TGAAAAGGAACTTATGCATCCTATTCAGAATCTTGTAAATGGAGAGCTGG
CTCGTGCTCTCCTGATTCAGGTTCAGAAGCTGAAGTTAGATATTGAGACG
GCAATGCTTGAACTGGATCAGATTCTCAGAGCAAATGAAAATCACTTTGC
TGTCCTTGCTGCCTTACCTGCGTTCTTCTCTCTTTATCTTGCTCATGTTG
GTGCGTGCATGGTTTAAGCAGGATCTANAGCAAAAGGAAAGGCAGAGTTG
CCGAATCCANAGAGGCTATCATGTGGANGTTGAGAAAAGATTTGCATACC
AATCTATTTGTCAGGACTGGGAAAGAGCCACTGCTGTTGGATTATGTTTC
ATCTGATCCCTATCTGCGTGAGGGCTGCAAAAACGTGATGGCTTTGAACG
GTTTTGATTGGCACCTGATCAACGTAAACCCATACTCCCTGGAGTTGATG
TGCCCTCTAAGA
back to top