EY729031

Overview
NameEY729031
Unique NameEY729031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY729031 vs. ExPASy Swiss-Prot
Match: RPOD_THEMA (RNA polymerase sigma factor rpoD OS=Thermotoga maritima GN=rpoD PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.803e-11
Identity = 54/233 (23.18%), Postives = 114/233 (48.93%), Query Frame = 1 
Query:   16 KAADLILASVEFLIKKTCYQYHQPHMHIEDMILEAQSLWLEAVLQYQPEKA-SLTSFAVLFLRQRLSLRMDGLSDVVSRSPGHIKDEWRVL-RVKTDFKDKHGREASVEELAKLLRLPVSRVSYVLRGMRALVSFDAAAAKEDGKGREMDSNTVGEQIIEETNVGVDQDASILPNLRTELAHQFESAIDGIITDPRDKDMLQMYYGFINWDGPTPSYXDVGKHFGMSYENVRQ 708
            KA + ++ S   L+     +Y    +  +D+I E     L+AV ++   K    +++A  ++RQ ++  +   +  + R P H+ +    L R++ ++  KHG E S+EELAK++  P  ++  +L   +  +S ++        G + DS+   E  + + ++   +  ++   +R EL    ++        PR+  +L+M YG +  DG   +  +VG++F ++ E +RQ
Sbjct:  154 KAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTI-RIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPI------GEDEDSSI--EDFVADDSIASPKKEAMRMLMREELEKVLKT------LSPREAMVLRMRYGLL--DGKPKTLEEVGQYFNVTRERIRQ 369
The following BLAST results are available for this feature:
BLAST of EY729031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPOD_THEMA5.803e-1123.18RNA polymerase sigma factor rpoD OS=Thermotoga mar... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-F09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729031 ID=EY729031; Name=EY729031; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGCCCAAAAGCAGCTGACCTCATTTTAGCTTCTGTAGAATT
TTTGATCAAGAAAACTTGCTACCAGTACCATCAGCCGCATATGCATATAG
AGGATATGATTTTGGAGGCTCAAAGTCTTTGGTTAGAAGCCGTCTTGCAG
TATCAGCCAGAAAAAGCCTCCCTCACAAGTTTTGCAGTTTTGTTCCTTAG
ACAGCGCCTCAGCTTGCGGATGGATGGGCTTTCAGATGTGGTGAGCCGGT
CACCTGGGCATATAAAAGATGAGTGGAGAGTTCTTAGAGTAAAGACTGAT
TTCAAAGATAAACATGGTAGAGAAGCCAGTGTAGAGGAACTTGCAAAATT
GCTCAGATTGCCAGTAAGTAGGGTGAGTTATGTTTTGAGGGGGATGAGGG
CTTTGGTTAGTTTTGATGCTGCTGCTGCAAAGGAAGATGGGAAAGGACGA
GAAATGGATTCCAATACTGTTGGGGAACAAATCATAGAGGAAACCAATGT
AGGCGTAGATCAGGATGCCAGCATCTTGCCAAACCTCAGAACGGAATTGG
CTCATCAATTTGAGAGTGCAATCGATGGCATAATTACAGATCCTAGAGAT
AAGGACATGCTGCAAATGTATTATGGGTTTATAAATTGGGATGGGCCCAC
TCCCAGTTACANGGATGTTGGAAAACATTTTGGTATGTCGTACGAAAACG
TACGCCAACGTTTGAAAAAACTGCTTAAATTGATTCANGAGAATCCACAG
NCTACAGCTAGGCTAAGTGAGTATTAACAGCTGAGGTTTTGGACTACNTA
GCCCTCAGAATAGGTTTTTCTANAGACTGCATATTGATGGGCTGTACAAA
CAGCTTGGTCTAGGTGGAAAAATTACAATGATAAAAAACTTGTTTTGTAT
AGCTGA
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