EY729027

Overview
NameEY729027
Unique NameEY729027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.028e-65
Identity = 135/208 (64.90%), Postives = 155/208 (74.52%), Query Frame = 1
Query:  214 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRYVRHRH-YRKGK 828
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILG  G G GQG +      F +    P MMSAGELESG    P  +IR RY       RKGK
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWG-GKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGK 221          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.911e-64
Identity = 135/199 (67.84%), Postives = 155/199 (77.89%), Query Frame = 1
Query:  214 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILG  G G GQG +      F + G  P MMSAGELESG    P  +IR RY
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 210          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.911e-64
Identity = 135/199 (67.84%), Postives = 155/199 (77.89%), Query Frame = 1
Query:  214 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILG  G G GQG +      F + G  P MMSAGELESG    P  +IR RY
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 210          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.027e-63
Identity = 133/200 (66.50%), Postives = 150/200 (75.00%), Query Frame = 1
Query:  217 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG  G G GQG +      F + G  P MMSAGELESG    P  +IR RY
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 214          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.788e-62
Identity = 134/200 (67.00%), Postives = 152/200 (76.00%), Query Frame = 1
Query:  217 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILG  G G GQG +      F + G  P MMSAGELESG    P  +IR RY
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 212          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.514e-61
Identity = 131/201 (65.17%), Postives = 147/201 (73.13%), Query Frame = 1
Query:  214 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILG  G G GQG +      FR+ G  P MMSAGELESG    P  +IR RY
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWG-GKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRY 214          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.282e-60
Identity = 129/205 (62.93%), Postives = 147/205 (71.71%), Query Frame = 1
Query:  202 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG  G G GQG +      FR+ G  P MMSAGELESG    P  +IR RY
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRY 214          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 6.360e-60
Identity = 132/212 (62.26%), Postives = 152/212 (71.70%), Query Frame = 1
Query:  199 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG  G G GQG +        + G  P MMSAGELESG    P  +IR RY
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWG-GKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRY 210          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.123e-59
Identity = 127/203 (62.56%), Postives = 151/203 (74.38%), Query Frame = 1
Query:  202 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG  G G GQG +      FR+ G  P MMSAGELESG    P  +IR RY
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRY 209          
BLAST of EY729027 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.558e-58
Identity = 123/204 (60.29%), Postives = 145/204 (71.08%), Query Frame = 1
Query:  193 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGYLGEGXGQG-NHSM*ACFRQDGHXPXMMSAGELESGMLENPL-VIRPRY 798
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG  G G GQG +      F + G  P MMSAGELESG    P  +IR RY
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 207          
The following BLAST results are available for this feature:
BLAST of EY729027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_MALDO5.028e-6564.90Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.911e-6467.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.911e-6467.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU8.027e-6366.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.788e-6267.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.514e-6165.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.282e-6062.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH6.360e-6062.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN4.123e-5962.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA4.558e-5860.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-F05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729027 ID=EY729027; Name=EY729027; organism=Citrus sinensis; type=EST; length=874bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAA
GAAACACTATAAGTCTTCACTCTGATCTTCAATTCTCTCCTCAAAGAGCA
CAACACGCACTCAGCGCATTGCTTCGCTTTCCTTTGCCTGCATTACAGCG
TGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAAT
GGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTG
TCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGG
ATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGT
CGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTTGCCTACG
ACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGAC
TCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAG
TTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACA
CGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTT
CACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCAT
CTTGGGGTATTTGGGGGAGGGCAANGGACAAGGAAATCATTCCATGTGAG
CTTGTTTTCGCCAAGATGGGCATNCACCCATNATGATGAGTGCCGGAGAA
TTGGAAAGTGGCATGCTGGAGAACCCGCTAGTTATCAGGCCGAGGTACGT
GAGGCACCGACATTATCGGAAGGGAAAATGGCTGCTCATGATCAAGATCT
GATGCAGGACCTGTTCTATGGTGG
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