EY729011

Overview
NameEY729011
Unique NameEY729011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 8.442e-45
Identity = 87/114 (76.32%), Postives = 89/114 (78.07%), Query Frame = -3
Query:  369 ASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYFAAEDEKMEELEPLVADLGETDPFMTAD 710
            ASLSHRS GSTGQRDAPGKVF            QRTVKNVWVYKIDPARNLMWVRGQVPGA GNFVFIKDA  KKPD+  LPFPTY A EDE   ELEPLVADLGE DPFM A+
Sbjct:  211 ASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFPTYLAPEDEDPSELEPLVADLGEVDPFMLAE 324          

HSP 2 Score: 25.7942 bits (55), Expect = 8.442e-45
Identity = 13/28 (46.43%), Postives = 17/28 (60.71%), Query Frame = -1
Query:  710 DITVPRKGK-VSGWNEKMGXKGMPASHG 790
            D+T   +GK   G  ++ G  GMPASHG
Sbjct:  183 DVTGITRGKGFQGCMKRHGFSGMPASHG 210          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_MAGSA (50S ribosomal protein L3 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.778e-12
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  459 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVKLLPFP 707
            S+SHRS GSTGQR  PGKVF           +Q T +N+ V   D  R L+ V+G VPG  G++V ++DAV +K PD   +PFP
Sbjct:  138 SVSHRSHGSTGQRQDPGKVFKGKKMAGHMGDEQVTTQNLTVVSTDADRGLILVKGSVPGHEGSWVLVRDAVKRKLPDG--VPFP 219          

HSP 2 Score: 23.483 bits (49), Expect = 2.778e-12
Identity = 8/23 (34.78%), Postives = 14/23 (60.87%), Query Frame = -2
Query:  688 GGMKRWGXKECQHLMGIIIASKS 756
            GGMKRW  +  +   G+ ++ +S
Sbjct:  121 GGMKRWNFRGLEATHGVSVSHRS 143          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_ERYLH (50S ribosomal protein L3 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = -3
Query:  387 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYFAAEDEKMEELEPLVADLGETD 707
            S+SHRS GSTG R  PG+VF           +QRT +N+ V + DP R L++V+G VPG   +++ I+DAV K P  + +PFP     ++   +E +   AD  + D
Sbjct:  139 SISHRSHGSTGNRQDPGRVFKGKKMAGHMGDRQRTQQNLEVVRTDPERGLIFVKGSVPGTKNSWMLIRDAV-KLPLPEGVPFPGAVVEKNAPAKEADAPAADEQKLD 244          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_ACICJ (50S ribosomal protein L3 OS=Acidiphilium cryptum (strain JF-5) GN=rplC PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.332e-11
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = -3
Query:  495 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 707
            S+SHRSLGSTG R  PGK F           ++ T  N+ V  ID ARNL+ ++G VPGA   +V ++DAV
Sbjct:  141 SISHRSLGSTGNRQDPGKTFKNKKMAGHLGGERITTLNLEVAAIDEARNLIMIKGAVPGAKDGYVLVRDAV 211          

HSP 2 Score: 23.483 bits (49), Expect = 1.332e-11
Identity = 9/23 (39.13%), Postives = 14/23 (60.87%), Query Frame = -2
Query:  688 GGMKRWGXKECQHLMGIIIASKS 756
            GGMKRW  +  +   G+ I+ +S
Sbjct:  124 GGMKRWNFRGLEASHGVSISHRS 146          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_PARDP (50S ribosomal protein L3 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 44/107 (41.12%), Postives = 56/107 (52.34%), Query Frame = -3
Query:  387 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYFAAEDEKMEELEPLVADLGETD 707
            S+SHRS GSTGQ   PGKVF            + T +N+ V K D  R L+ V+G VPG+ G +V IKDAV KKP  +   FP    ++  + E   P  A   E D
Sbjct:  139 SISHRSHGSTGQCQDPGKVFKGKKMAGHLGAVRVTTQNLQVVKTDAERGLIMVKGSVPGSKGGWVTIKDAV-KKPLAESTVFPAATRSKAVQAEAAAPAEAAAPEGD 244          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_SPHWW (50S ribosomal protein L3 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplC PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = -3
Query:  459 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFP 707
            S+SHRSLGSTGQR  PGKVF           K RT +N+ + + D  R L++V+G VPG+ G ++ +KD+V K    K  PFP
Sbjct:  138 SVSHRSLGSTGQRQDPGKVFKNKKMAGHMGDKNRTQQNLEIVQTDAERGLLFVKGSVPGSKGGWLLVKDSV-KIAAPKDAPFP 219          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_MESSB (50S ribosomal protein L3 OS=Mesorhizobium sp. (strain BNC1) GN=rplC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = -3
Query:  396 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYFAAEDEKMEELEPLVADLG 707
            S+SHR+ GSTGQR  PGKVF           ++ T +N+ V   D  R L+ VRG VPG+ G+++ ++DAV K P  K  P P    A +   E+     A  G
Sbjct:  138 SVSHRTHGSTGQRQDPGKVFKGKKMAGHMGDRRVTTQNLEVVSTDTERGLILVRGAVPGSKGSWIMVRDAV-KAPLPKEAPLPAAIRASNNNAEKAAATAAGEG 240          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_GRABC (50S ribosomal protein L3 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = -3
Query:  486 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 707
            S+SHRS GSTG R  PGK F           ++ T +NV V  +D AR L+ +RG +PGA G +V ++DAV +K
Sbjct:  138 SISHRSHGSTGNRQDPGKTFKNKKMAGHLGDERVTTQNVEVAHVDAARGLLMIRGSIPGAKGGYVLVRDAVKRK 211          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_METNO (50S ribosomal protein L3 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplC PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.247e-11
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = -3
Query:  486 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 707
            S+SHRS+GSTG R  PGK F           ++ T +N+ V + DP R L+ V G VPG +G ++ ++DAV +K
Sbjct:  138 SISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIHVRDAVKRK 211          

HSP 2 Score: 21.557 bits (44), Expect = 8.247e-11
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = -2
Query:  688 GGMKRWGXKECQHLMGIIIASKS 756
            GGMKRW     +   G+ I+ +S
Sbjct:  121 GGMKRWNFGGLRASHGVSISHRS 143          
BLAST of EY729011 vs. ExPASy Swiss-Prot
Match: RL3_METS4 (50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46) GN=rplC PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.251e-11
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = -3
Query:  486 SLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 707
            S+SHRS+GSTG R  PGK F           ++ T +N+ V + DP R L+ V G VPG +G ++ I+DAV +K
Sbjct:  138 SISHRSIGSTGGRQDPGKTFKNKKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIRDAVKRK 211          

HSP 2 Score: 21.9422 bits (45), Expect = 8.251e-11
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = -2
Query:  688 GGMKRWGXKECQHLMGIIIASKS 756
            GGMKRW     +   G+ I+ +S
Sbjct:  121 GGMKRWNFGGLRATHGVSISHRS 143          
The following BLAST results are available for this feature:
BLAST of EY729011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RK3B_ARATH8.442e-4576.3250S ribosomal protein L3-2, chloroplastic OS=Arabi... [more]
RL3_MAGSA2.778e-1246.4350S ribosomal protein L3 OS=Magnetospirillum magne... [more]
RL3_ERYLH5.107e-1238.3250S ribosomal protein L3 OS=Erythrobacter litorali... [more]
RL3_ACICJ1.332e-1146.4850S ribosomal protein L3 OS=Acidiphilium cryptum (... [more]
RL3_PARDP2.535e-1141.1250S ribosomal protein L3 OS=Paracoccus denitrifica... [more]
RL3_SPHWW3.311e-1145.7850S ribosomal protein L3 OS=Sphingomonas wittichii... [more]
RL3_MESSB5.647e-1138.4650S ribosomal protein L3 OS=Mesorhizobium sp. (str... [more]
RL3_GRABC7.375e-1144.5950S ribosomal protein L3 OS=Granulibacter bethesde... [more]
RL3_METNO8.247e-1141.8950S ribosomal protein L3 OS=Methylobacterium nodul... [more]
RL3_METS48.251e-1143.2450S ribosomal protein L3 OS=Methylobacterium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-D10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729011 ID=EY729011; Name=EY729011; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTTTAACTACAAAAGCTTGA
ACAACTAACGAGACAATTTGCAGGTTTGGTTTCCCCCATTGTCTTATTTC
AAGTTTCAAACAGGAAGATTTCAATCCAAAAGCCAATGGAAAGAGATAAT
GTCAATCACTATCAAAATCAGATGTTAACACCATGGATAAAATTACATGT
TCTCCAGCTGCAATCCTATTGTAAGTAATAAAGAGGAAAATCTAACTGAC
AGCCCCCGCTTTCTCCGTATTCACCCCCAAAAAAGAAGAGCACTTCCGGT
GGGTACCTAACCCTATGGAAGGGAGACACAGAATCTTATTACTTCTTAGG
AATTGCGTACAAAGCCCAATCTGCCGTCATAAATGGATCCGTTTCACCAA
GATCAGCAACCAGAGGTTCCAATTCCTCCATCTTCTCGTCTTCTGCTGCA
AAGTATGTGGGGAATGGGAGCAGTTTAACATCAGGTTTCTTGTAAACAGC
ATCCTTTATAAATACAAAGTTTCCTGAAGCACCTGGCACCTGGCCTCTCA
CCCACATCAAATTCCTTGCTGGATCTATTTTGTATACCCATACATTTTTT
ACGGTTCTCTGCTTTCCACCCATTCGCCCAGGCATTTTTTTGCCCTTAAA
TACCTTGCCAGGAGCATCCCTCTGACCGGTAGAACCNAGACTTCGATGCG
ATAATGATGCCCATGAGATGCTGGCATTCCTTTANTCCCCATCTTTTCAT
TCCACCCTGANACCTTTCCCTTTCGTGGTACCGTGATATCACGTATTGGC
AGGAATAAATGACAACTCCAGTGATGTGCATGGGGAGAGTGCTCTCTGTG
ACAGAACTCCGNCATTCTCTCAGTGACACTTGACCTAATGACACT
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