EY728980

Overview
NameEY728980
Unique NameEY728980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 7.262e-102
Identity = 190/249 (76.31%), Postives = 202/249 (81.12%), Query Frame = 1
Query:  166 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKWHSILVQKHYPL-EV*WXITDFFQRL-*GNWKSSL-SCCLWYD 903
            M F KIKV NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGD YRATDTVIQG     LVFVPEG DEKTE EVYNFTG GGVALSM  TDES+R+FA  SMN AYQKKW   L  K+  L +      D FQ +   NWKS      +WY+
Sbjct:    1 MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEEAGIWYE 249          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 6.148e-101
Identity = 188/249 (75.50%), Postives = 202/249 (81.12%), Query Frame = 1
Query:  166 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKWHSILVQKHYPL-EV*WXITDFFQRL-*GNWKSSL-SCCLWYD 903
            MAFQKI V NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGD YRATDTVI+G     LVFVPEG DEKTE EVYNFTG GGVALSM  TDES+R+FA  SMN A+QKKW   L  K+  L +      D FQ +   NWKS      +WY+
Sbjct:    1 MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAFQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEEAGIWYE 249          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.514e-99
Identity = 186/253 (73.52%), Postives = 203/253 (80.24%), Query Frame = 1
Query:  154 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKWHSILVQKHYPL-EV*WXITDFFQRL-*GNWKSSLSCC-LWYD 903
            T   M FQKIKVANPIVEMDGDEMTR+ WK IKDKLIFPF+ELDIKYFDLGLP RD T+DKVTVESAEATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPGWTKPICIGRHAFGD YRATD+VI+GP    LVFVPEG+ E T+LEVYNFTGEGGVAL+M  TDESIR+FA  SM  A +KKW   L  K+  L +      D FQ +    WKS      +WY+
Sbjct:   18 TTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKYEAAGIWYE 270          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.674e-98
Identity = 183/248 (73.79%), Postives = 202/248 (81.45%), Query Frame = 1
Query:  169 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKWHSILVQKHYPL-EV*WXITDFFQRL-*GNWKSSLSCC-LWYD 903
            AFQKIKVANPIVEMDGDEMTRV WKSIKDKLI PFLELDIKY+DLGLP RD TDDKVT+ESAEATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PGWTK ICIGRHAFGD YRATDTVI+G     LVFVPEG+ E+TE EV+NFTGEGGV+L+M  TDESIR+FA  SM TA +KKW   L  K+  L +      D FQ +   +WKS      +WY+
Sbjct:    3 AFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAMYNTDESIRSFAEASMATALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEAAGIWYE 250          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 2.202e-74
Identity = 136/211 (64.45%), Postives = 161/211 (76.30%), Query Frame = 1
Query:  154 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKW 786
            T++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD Y+ATD V        +VF P+      E EVYNF   GGV + M  TDESI  FA      A QKKW
Sbjct:   35 TRRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKW 244          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.367e-74
Identity = 134/206 (65.05%), Postives = 159/206 (77.18%), Query Frame = 1
Query:  169 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKW 786
            A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD Y+ATD V+       +VF P+      + EVYNF   GGV + M  TDESI  FA      A QKKW
Sbjct:    9 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKW 213          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 8.367e-74
Identity = 135/210 (64.29%), Postives = 160/210 (76.19%), Query Frame = 1
Query:  157 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKW 786
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD Y+ATD V        +VF P+      E EVYNF   GGV + M  TDESI  FA      A QKKW
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKW 244          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.427e-73
Identity = 134/210 (63.81%), Postives = 161/210 (76.67%), Query Frame = 1
Query:  157 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKW 786
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD Y+ATD V+       +VF P+      E EVYNF   GGV + M  TDESI  FA      A QKKW
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKW 244          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 276.174 bits (705), Expect = 1.864e-73
Identity = 135/218 (61.93%), Postives = 163/218 (74.77%), Query Frame = 1
Query:  157 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKWHSILVQKH 810
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD Y+ATD V+       LVF P+      E EVYNF   GGV + M  TDESI  FA      + QKKW   L  K+
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKN 252          
BLAST of EY728980 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 4.152e-73
Identity = 135/218 (61.93%), Postives = 163/218 (74.77%), Query Frame = 1
Query:  157 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDXYRATDTVIQGPLAT*LVFVPEGKDEKTELEVYNFTGEGGVALSMXYTDESIRAFAXGSMNTAYQKKWHSILVQKH 810
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GD Y+ATD V+       LVF P+      E EVYNF   GGV + M  TDESI  FA      + QKKW   L  K+
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKN 252          
The following BLAST results are available for this feature:
BLAST of EY728980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC7.262e-10276.31Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU6.148e-10175.50Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA1.514e-9973.52Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_SOYBN1.674e-9873.79Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MACFA2.202e-7464.45Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG8.367e-7465.05Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_HUMAN8.367e-7464.29Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN1.427e-7363.81Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE1.864e-7361.93Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT4.152e-7361.93Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-A09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728980 ID=EY728980; Name=EY728980; organism=Citrus sinensis; type=EST; length=923bp
CACGCGTCCGGTCAAACTCGAAAGCAGAAGCATTTCAATTTTCATAGTAT
TATTATTATTATTGCTTCTTGCTGCTTCTTTTTGTCCACACGACCTCGGC
ACCTCCGCTCTGACCCTATTATCTCTCTCTAGTTGTGAATCAACCGAAAC
TGAACAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCAATCCCAT
CGTCGAAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGATTA
AGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCGAC
CTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAAAG
TGCAGAAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTATTA
CTCCAGATGAAGCTCGTGTTAAGGAATTTGTCTTGAAACAGATGTGGAAG
AGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGAGA
ACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGGCTGGACAAAGC
CCATATGCATTGGCAGGCATGCTTTTGGTGATNCATATCGAGCCACTGAT
ACAGTTATTCAAGGACCCCTGGCAACTTAATTGGTGTTTGTACCAGAGGG
AAAAGATGAGAAGACAGAGTTAGAGGTTTACAACTTTACGGGTGAGGGTG
GAGTTGCATTGTCCATGTANTACACTGATGAGTCCATCCGAGCTTTTGCT
GANGGCTCTATGAACACTGCCTATCAGAAGAAGTGGCACTCTATCTTAGT
ACAAAAACACTATCCTTTAGAAGTATGATGGANGATCACAGACTTTTTCC
AGAGGTTATGAGGCAACTGGAAGTCAAGTTTGAGCTGCTGCCTATGGTAT
GACTCCGCTCATGATGATTTGTA
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