EY728977

Overview
NameEY728977
Unique NameEY728977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: L14AA_XENLA (Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm14a-A PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTG 451
            ISL SK+EIRYEG+L+ I+TE S++ L  VRSFGTE R  D P +PP D+I+EYI+FRGSDIKDL V   P  Q   S+  DPAI+QS    ++ +S    S  G
Sbjct:   12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEIFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSASSFQSVSSYG 113          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: LS14A_XENTR (Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTG 451
            ISL SK+EIRYEG+L+ I+TE S++ L  VRSFGTE R  D P +PP D+++EYI+FRGSDIKDL V   P  Q   S+  DPAI+QS    ++ +S    S  G
Sbjct:   12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSASSFQSVSSYG 113          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: L14AB_XENLA (Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.919e-21
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTG 451
            ISL SK+EIRYEG+L+ I+TE S++ L  VRSFGTE R  D P +PP D+++EYI+FRGSDIKDL V   P  Q   S+  DPAI+QS    ++ +S    S  G
Sbjct:   12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQSSLGSSSASSFQSVSSYG 113          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: SUM2_SCHPO (Protein sum2 OS=Schizosaccharomyces pombe GN=sum2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.731e-21
Identity = 60/149 (40.27%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQ-VPPSDKIYEYILFRGSDIKDLQVK------SSPPIQTTTSIHNDPAII-----QSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYXPXGSL 547
            ISL SKS+IRY G+L +IN+++S++ L++VR  GTEGR++D  Q +PPSD +++YI+FRGSD+KDL+++      S+PP+Q      NDPAII     Q +++QA  A    P        P  Q    G     +   P  + P G L
Sbjct:    9 ISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDYIVFRGSDVKDLRIEEPATTPSAPPVQPP----NDPAIIGSNSGQYNWNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPYYMYPNAPAQFVPPGGL 153          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: LS14A_PONAB (Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQS 400
            ISL SK+EIRYEG+L+ I+TE S++ L  VRSFGTE R  D P +PP D+++EYI+FRGSDIKDL V   P  Q   S+  DPAI+QS
Sbjct:   12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQS 96          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: LS14A_MOUSE (Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQS 400
            ISL SK+EIRYEG+L+ I+TE S++ L  VRSFGTE R  D P +PP D+++EYI+FRGSDIKDL V   P  Q   S+  DPAI+QS
Sbjct:   12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQS 96          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: LS14A_HUMAN (Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQS 400
            ISL SK+EIRYEG+L+ I+TE S++ L  VRSFGTE R  D P +PP D+++EYI+FRGSDIKDL V   P  Q   S+  DPAI+QS
Sbjct:   12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQS 96          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: LS14A_BOVIN (Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQS 400
            ISL SK+EIRYEG+L+ I+TE S++ L  VRSFGTE R  D P +PP D+++EYI+FRGSDIKDL V   P  Q   S+  DPAI+QS
Sbjct:   12 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IPPRDEVFEYIIFRGSDIKDLTVCEPPKPQ--CSLPQDPAIVQS 96          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: L14BB_XENLA (Protein LSM14 homolog B-B OS=Xenopus laevis GN=lsm14b-B PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIASTTLP 439
            ISL SK++IRYEG+L+ I+TE S++ L  VRSFGTE R  D P  PP +++YEYI+FRGSDIKD+ V   P  + + ++  DPAI+QS    AA    ++P
Sbjct:   12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYIIFRGSDIKDITVCEPP--KASHALSQDPAIVQSSLGSAASYQPSVP 109          
BLAST of EY728977 vs. ExPASy Swiss-Prot
Match: L14BA_XENLA (Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-A PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.837e-20
Identity = 65/151 (43.05%), Postives = 86/151 (56.95%), Query Frame = 2
Query:  137 ISLTSKSEIRYEGVLFNINTEESSIGLRNVRSFGTEGRRKDGPQVPPSDKIYEYILFRGSDIKDLQVKSSPPIQTTTSIHNDPAIIQSHYSQAAIAS--TTLP-SGTGSLP--DPTSQTSQLGLSRPPFQGNPPLYXPXGSLGAWGSSPMP 574
            ISL SK++IRYEG+L+ I+TE S++ L  VRSFGTE R  D P  PP +++YEYI+FRGSDIKD+ V   P  + + ++  DPAI+QS    A  AS   ++P S    +P     + TS L        G   L  P  S GA  S   P
Sbjct:   12 ISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-APPREEVYEYIIFRGSDIKDITVCEPP--KASHALPQDPAIVQSSLGSAPAASYQPSVPYSPFRGMPTYSQLAATSLLSQQYAASLGLEKLGSPTASAGASSSCSSP 159          
The following BLAST results are available for this feature:
BLAST of EY728977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
L14AA_XENLA4.532e-2153.33Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm... [more]
LS14A_XENTR5.919e-2152.38Protein LSM14 homolog A OS=Xenopus tropicalis GN=l... [more]
L14AB_XENLA5.919e-2152.38Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm... [more]
SUM2_SCHPO7.731e-2140.27Protein sum2 OS=Schizosaccharomyces pombe GN=sum2 ... [more]
LS14A_PONAB2.249e-2059.09Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A ... [more]
LS14A_MOUSE2.249e-2059.09Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a ... [more]
LS14A_HUMAN2.249e-2059.09Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A ... [more]
LS14A_BOVIN2.249e-2059.09Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE... [more]
L14BB_XENLA2.249e-2050.50Protein LSM14 homolog B-B OS=Xenopus laevis GN=lsm... [more]
L14BA_XENLA3.837e-2043.05Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-011-A04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728977 ID=EY728977; Name=EY728977; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGCCCACGCGTCCGGAGAAAAGAAGGGGAAAAAAAGGCACT
CGTCTCAAAGGCTAATGGCAGCGGCGGCAACAGAGGCGCCCAGATCTTCT
TCAAGTGGGTCTGCTGATTCGTACATCGGTAGCTTGATCAGCTTGACTTC
CAAGTCTGAGATTCGTTACGAGGGTGTTCTCTTTAACATCAACACTGAAG
AATCTAGCATCGGTTTGAGAAATGTAAGATCGTTTGGAACAGAAGGGCGA
AGAAAAGATGGTCCCCAGGTTCCACCAAGTGATAAAATTTATGAGTACAT
ACTCTTTCGAGGAAGTGATATCAAGGATTTGCAGGTCAAATCTTCCCCAC
CGATTCAGACTACAACATCTATACACAATGATCCTGCTATTATACAGTCG
CACTATTCTCAGGCAGCAATTGCATCTACAACCTTGCCTTCTGGTACTGG
ATCATTACCTGATCCAACTTCCCAAACGTCACAGCTAGGACTTTCCAGAC
CTCCATTTCAGGGGAATCCTCCCCTTTATCANCCANGTGGCAGTTTGGGT
GCATGGGGTTCATCACCCATGCCCANCAACAATGGTGCTGGGCTTGCCAT
GCCAATGTACTGGCAAGGATTCTATGGGTCACCGAATGGGCTTCAGGGCC
ANNCAGCACCTTTGCTTCAACCCCCTCCTGGATTGTCATGCTACCGTCCA
TGCANCATCCATGCAATATCTGCCATGAATCTTCTCTACTACTGGGGGTT
CAACTTACANCTTCCCATTGGCAAACACGCCCTCTTTGATGCCACCATTA
NTCAGGAACTTGAATTGCTGTCTCTATGCTTCTGCACATCTCTGCATGAT
TCAAACTCATCACAATCTGATTCTGAGCAGCTGC
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