EY728954

Overview
NameEY728954
Unique NameEY728954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY728954 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP2 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispH PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.100e-12
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  496 ETFRHNLMRSDKYNRRGFGHKEETIELMNQQYASDIIKKLKENGYEYTWG 645
            + F+ +L  S+ Y R+GFGHK+E   +M  +Y S +I+++++N YE T G
Sbjct:    4 KAFKRSLNHSENYYRQGFGHKDEVAGMMTSEYQSSLIQEIRDNNYELTRG 53

HSP 2 Score: 42.743 bits (99), Expect = 1.100e-12
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 2 
Query:  644 GNVTVKLAEAYCFCWGVERAVQMLM-NKKQFP*E 742
            G+VT+ LAEA+ FCWGVERAV M    +K FP E
Sbjct:   53 GDVTIYLAEAFGFCWGVERAVAMAYETRKHFPTE 86
The following BLAST results are available for this feature:
BLAST of EY728954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ISPH_SYNP21.100e-1240.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-G03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728954 ID=EY728954; Name=EY728954; organism=Citrus sinensis; type=EST; length=777bp
CACGCGTCCGAACGAAATGATGCATTCATGGTTTGGAATAATTGAAGGCC
AGCCTTAATAATATTATTATTAGCTTCATAGCAACTAGGGTTTAAGCTAA
TGAAAAAATGATGCATGCATGGTTTGGAATTCAAGGTTAGCCTTAAAAAT
ATTATTATTAGCTTCGTAGGGTTTAAGCTAATGAAATGATGCATGCTTGG
TTTGGAAGTCAAGGTCAGCCTTATAATTATTATTAACATTTATTAGCTTA
GTAACAATTAAATTCGATTCCTCTCTATCATTACTTGCCCCGACTCTTTC
TCTCTCAATCTGTGAATCGCTCATCATGGCGACGACTCTGCAATTCTGCC
GTCTATGCACGCGAACTGACATAGCTTCGCGCCATAATAATCGCGCCGGA
GTGCTGGCTCTCCGGCACCTGCAGCCTGTGAACGTCAGAAGCTCCGGTCA
AGAATTGCCGAGCTCGGCGGTGGCTGTTGGTGCCGAATTTGACGCGAAAC
ATTTCGTCATAACCTGATGAGAAGTGATAAGTATAATCGGAGAGGATTTG
GCCACAAAGAAGAGACTATAGAGCTCATGAATCAACAGTACGCAAGTGAT
ATTATAAAGAAATTGAAGGAGAATGGATACGAGTATACGTGGGGGAAATG
TTACGGTGAAGCTGGCCGAAGCATATTGCTTTTGCTGGGGAGTTGAGCGT
GCTGTGCAAATGCTTATGAACAAGAAACAGTTCCCATGAGAGATTGGATT
ACATGAATCTTCCATCACTATACAGCG
back to top