EY728938

Overview
NameEY728938
Unique NameEY728938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728938 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.479e-85
Identity = 100/149 (67.11%), Postives = 114/149 (76.51%), Query Frame = 2
Query:   86 DFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGREWL 532
            DFSGRRSTRFVSKMHFGR K  M+TRHS  AE+AL +   F+ DD     ++  FE KLCG+DD T+++RELGNR E  KA+  + FAVKRE RKN+QGKLASAMIS LGR GKV +AK IFETA   GYGNTVYAFSALISAYGR  L
Sbjct:  135 DFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGL 283          

HSP 2 Score: 139.813 bits (351), Expect = 4.479e-85
Identity = 77/121 (63.64%), Postives = 89/121 (73.55%), Query Frame = 3
Query:  519 GGSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVNFXHVVEIFDEYVRNGVQPDRITXNSLLAVCXKGGLWEAARNWFMKMVLKGSIR-IFPQYTLLNAIGKVRQW-IGFENLAE 875
            G SG  +EAISVFNSMK Y L+PNLVTYNAVIDACGKGG+ F  V + FDE  RNGVQPDRIT NSLLAVC +GGLWEAARN F +M  +   + +F   TLL+AI K  Q  + FE LA+
Sbjct:  279 GRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399          
BLAST of EY728938 vs. ExPASy Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.069e-23
Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  519 GGSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVNFXHVVEIFDEYVRNGVQPDRITXNSLLAVCXKGGLWEAARNWFMKMVLKGSIRIFPQYT-LLNAIGKVRQ 848
            G +G  + ++ + + MK   + P+++TYN VI+AC +GG+++  ++ +F E    G+QPD +T N+LL+ C   GL + A   F  M   G +     Y+ L+   GK+R+
Sbjct:  187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297          

HSP 2 Score: 58.9214 bits (141), Expect = 6.069e-23
Identity = 37/145 (25.52%), Postives = 76/145 (52.41%), Query Frame = 2
Query:   89 FSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 523
            FSG+   +    +  G P +++         E+L +  +      S+   L  F+ KL   +D+  + +E   RG+W ++++ F +  ++   K ++  + + MIS+LGR G +D    +F+   ++G   +V++++ALI+AYGR
Sbjct:   47 FSGKIKAK-TKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKL-SLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNE-HIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGR 188          
BLAST of EY728938 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.525e-16
Identity = 29/89 (32.58%), Postives = 49/89 (55.06%), Query Frame = 3
Query:  525 SGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVNFXHVVEIFDEYVRNGVQPDRITXNSLLAVCXKGGLWEAARNWFMKMVLKG 791
            SG  +EA++VF  M+    KP L+TYN +++  GK G  +  +  + ++   +G+ PD  T N+L+  C +G L + A   F +M   G
Sbjct:  221 SGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG 309          

HSP 2 Score: 42.3578 bits (98), Expect = 5.525e-16
Identity = 22/77 (28.57%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  290 LRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 517
            L+ LG   ++  A++ F + +K+++ ++     + + +IS+LG+ G+V  A N+F     +G+   VY++++LISA+
Sbjct:  142 LKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAF 218          
BLAST of EY728938 vs. ExPASy Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 5.468e-11
Identity = 27/85 (31.76%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  525 SGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVNFXHVVEIFDEYVRNGVQPDRITXNSLLAVCXKGGLWEAARNWFMKM 779
            +G  ++AI +F  MK     P LVTYN ++D  GK G ++  ++ + DE    G++ D  T +++L+ C + GL   A+ +F ++
Sbjct:  223 TGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAEL 307          

HSP 2 Score: 30.0314 bits (66), Expect = 5.468e-11
Identity = 21/86 (24.42%), Postives = 39/86 (45.35%), Query Frame = 2
Query:  275 DYTFLLRELGNRGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 523
            D   L++ L + G W +A+  F + V        K D  ++    + ILGR  +  +A  + +    + Y   V A++ ++ AY R
Sbjct:  138 DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDH-QVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSR 222          
The following BLAST results are available for this feature:
BLAST of EY728938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PP178_ARATH4.479e-8567.11Pentatricopeptide repeat-containing protein At2g31... [more]
PP124_ARATH6.069e-2332.43Pentatricopeptide repeat-containing protein At1g74... [more]
PP362_ARATH5.525e-1632.58Pentatricopeptide repeat-containing protein At5g02... [more]
PP163_ARATH5.468e-1131.76Pentatricopeptide repeat-containing protein At2g18... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-E10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728938 ID=EY728938; Name=EY728938; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGCCCACGCGTCCGCAAACCCTAAACCTTTCCATTCTCTCT
CTCCACTTCCCTCCTCAAAATCCGAACTTGCTCCTGATTTCTCCGGCCGC
CGGTCCACTCGCTTCGTTTCCAAAATGCACTTCGGGCGCCCCAAAATTGC
TATGAGCACGCGCCACTCGGTAGTAGCTGAAGAAGCACTTCACCACGTCA
CTGCTTTCGCTAGAGATGACGTGTCTCTCGGTGATATTTTGAAAAAGTTC
GAGTTTAAACTCTGTGGTGCTGACGACTACACGTTCCTGCTTCGAGAGCT
TGGAAACCGAGGTGAGTGGTCAAAGGCCATCCAATGTTTTGCCTTTGCAG
TCAAAAGGGAGGAAAGAAAGAATGATCAAGGGAAATTAGCGAGTGCCATG
ATCAGCATTCTTGGTAGATTAGGAAAAGTTGATCTTGCTAAGAATATTTT
CGAAACTGCGTTAAATGAAGGTTATGGAAACACTGTATATGCTTTTTCTG
CGTTAATTAGTGCTTATGGGAGGGAGTGGTTATTGCCAAGAGGCCATAAG
TGTGTTTAATTCTATGAAAAGATATCATTTAAAGCCGAATTTAGTCACTT
ACAATGCTGTGATTGATGCGTGTGGTAAAGGGGGTGTAAATTTTAANCAT
GTGGTGGAGATTTTTGATGAATATGTTAGAAATGGAGTGCAGCCTGATCG
AATAACGTTNAATTCTTTGCTTGCCGTGTGTANTAAAGGAGGATTATGGG
AGGCAGCGAGGAATTGGTTCATGAAAATGGTTCTAAAGGGATCGATCAGG
ATATTTCCCCAATATACTCTATTAAATGCCATTGGCAAGGTGCGCCAATG
GATTGGCTTTGAAAACTTGGCGGAAT
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