EY728938
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY728938 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 4.479e-85 Identity = 100/149 (67.11%), Postives = 114/149 (76.51%), Query Frame = 2 Query: 86 DFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGREWL 532 DFSGRRSTRFVSKMHFGR K M+TRHS AE+AL + F+ DD ++ FE KLCG+DD T+++RELGNR E KA+ + FAVKRE RKN+QGKLASAMIS LGR GKV +AK IFETA GYGNTVYAFSALISAYGR L Sbjct: 135 DFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGL 283 HSP 2 Score: 139.813 bits (351), Expect = 4.479e-85 Identity = 77/121 (63.64%), Postives = 89/121 (73.55%), Query Frame = 3 Query: 519 GGSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVNFXHVVEIFDEYVRNGVQPDRITXNSLLAVCXKGGLWEAARNWFMKMVLKGSIR-IFPQYTLLNAIGKVRQW-IGFENLAE 875 G SG +EAISVFNSMK Y L+PNLVTYNAVIDACGKGG+ F V + FDE RNGVQPDRIT NSLLAVC +GGLWEAARN F +M + + +F TLL+AI K Q + FE LA+ Sbjct: 279 GRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399
BLAST of EY728938 vs. ExPASy Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 6.069e-23 Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = 3 Query: 519 GGSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVNFXHVVEIFDEYVRNGVQPDRITXNSLLAVCXKGGLWEAARNWFMKMVLKGSIRIFPQYT-LLNAIGKVRQ 848 G +G + ++ + + MK + P+++TYN VI+AC +GG+++ ++ +F E G+QPD +T N+LL+ C GL + A F M G + Y+ L+ GK+R+ Sbjct: 187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297 HSP 2 Score: 58.9214 bits (141), Expect = 6.069e-23 Identity = 37/145 (25.52%), Postives = 76/145 (52.41%), Query Frame = 2 Query: 89 FSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 523 FSG+ + + G P +++ E+L + + S+ L F+ KL +D+ + +E RG+W ++++ F + ++ K ++ + + MIS+LGR G +D +F+ ++G +V++++ALI+AYGR Sbjct: 47 FSGKIKAK-TKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKNKL-SLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNE-HIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGR 188
BLAST of EY728938 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 5.525e-16 Identity = 29/89 (32.58%), Postives = 49/89 (55.06%), Query Frame = 3 Query: 525 SGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVNFXHVVEIFDEYVRNGVQPDRITXNSLLAVCXKGGLWEAARNWFMKMVLKG 791 SG +EA++VF M+ KP L+TYN +++ GK G + + + ++ +G+ PD T N+L+ C +G L + A F +M G Sbjct: 221 SGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG 309 HSP 2 Score: 42.3578 bits (98), Expect = 5.525e-16 Identity = 22/77 (28.57%), Postives = 48/77 (62.34%), Query Frame = 2 Query: 290 LRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 517 L+ LG ++ A++ F + +K+++ ++ + + +IS+LG+ G+V A N+F +G+ VY++++LISA+ Sbjct: 142 LKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAF 218
BLAST of EY728938 vs. ExPASy Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 5.468e-11 Identity = 27/85 (31.76%), Postives = 49/85 (57.65%), Query Frame = 3 Query: 525 SGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVNFXHVVEIFDEYVRNGVQPDRITXNSLLAVCXKGGLWEAARNWFMKM 779 +G ++AI +F MK P LVTYN ++D GK G ++ ++ + DE G++ D T +++L+ C + GL A+ +F ++ Sbjct: 223 TGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAEL 307 HSP 2 Score: 30.0314 bits (66), Expect = 5.468e-11 Identity = 21/86 (24.42%), Postives = 39/86 (45.35%), Query Frame = 2 Query: 275 DYTFLLRELGNRGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 523 D L++ L + G W +A+ F + V K D ++ + ILGR + +A + + + Y V A++ ++ AY R Sbjct: 138 DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDH-QVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSR 222 The following BLAST results are available for this feature:
BLAST of EY728938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY728938 ID=EY728938; Name=EY728938; organism=Citrus sinensis; type=EST; length=876bpback to top |