EY728932

Overview
NameEY728932
Unique NameEY728932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_PSEAE (Electron transfer flavoprotein subunit alpha OS=Pseudomonas aeruginosa GN=etfA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPELEKLV 230
            GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLF+AVPELEK V
Sbjct:  234 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFDAVPELEKAV 309          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_RAT (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Rattus norvegicus GN=Etfa PE=1 SV=4)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPELEKLV 230
            GFVPNDMQVGQTGKIVAP+LYIAVGISGAIQHLAGMKDSK IVAINKD EAPIFQVADYG+VADLF+ VPE+ +++
Sbjct:  255 GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 330          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_PONAB (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Pongo abelii GN=ETFA PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPELEKLV 230
            GFVPNDMQVGQTGKIVAP+LYIAVGISGAIQHLAGMKDSK IVAINKD EAPIFQVADYG+VADLF+ VPE+ +++
Sbjct:  255 GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 330          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_MOUSE (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Mus musculus GN=Etfa PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPELEKLV 230
            GFVPNDMQVGQTGKIVAP+LYIAVGISGAIQHLAGMKDSK IVAINKD EAPIFQVADYG+VADLF+ VPE+ +++
Sbjct:  255 GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 330          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_MACFA (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Macaca fascicularis GN=ETFA PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPELEKLV 230
            GFVPNDMQVGQTGKIVAP+LYIAVGISGAIQHLAGMKDSK IVAINKD EAPIFQVADYG+VADLF+ VPE+ +++
Sbjct:  255 GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 330          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_HUMAN (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Homo sapiens GN=ETFA PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPELEKLV 230
            GFVPNDMQVGQTGKIVAP+LYIAVGISGAIQHLAGMKDSK IVAINKD EAPIFQVADYG+VADLF+ VPE+ +++
Sbjct:  255 GFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 330          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_BRAJA (Electron transfer flavoprotein subunit alpha OS=Bradyrhizobium japonicum GN=etfA PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPEL 218
            G+ PND QVGQTGK+VAP+LY+AVGISGAIQHLAGMKDSKVIVAINKDE+APIFQVADYGLVADL++AVPEL
Sbjct:  234 GYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEDAPIFQVADYGLVADLYQAVPEL 305          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_BOVIN (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Bos taurus GN=ETFA PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPELEKLV 230
            GFV ND+QVGQTGKIVAP+LYIAVGISGAIQHLAGMKDSK IVAINKD EAPIFQVADYG+VADLF+ VPE+ +L+
Sbjct:  255 GFVTNDLQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTELL 330          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_PARDE (Electron transfer flavoprotein subunit alpha OS=Paracoccus denitrificans GN=etfA PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.117e-30
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPEL 218
            G+ PND QVGQTGK+VAP+LY+AVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQ+ADYGLV DLF  VPEL
Sbjct:  233 GYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPEL 304          
BLAST of EY728932 vs. ExPASy Swiss-Prot
Match: ETFA_CAEEL (Probable electron transfer flavoprotein subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F27D4.1 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 3
Query:    3 GFVPNDMQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQVADYGLVADLFEAVPEL 218
            G+VPNDMQVGQTGKIVAP+LYIA+GISGAIQHLAGMKDSKVIVAINKD +APIFQVAD GL ADLF+AVPEL
Sbjct:  256 GYVPNDMQVGQTGKIVAPELYIAIGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADIGLKADLFKAVPEL 327          
The following BLAST results are available for this feature:
BLAST of EY728932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ETFA_PSEAE8.248e-3597.37Electron transfer flavoprotein subunit alpha OS=Ps... [more]
ETFA_RAT4.236e-3185.53Electron transfer flavoprotein subunit alpha, mito... [more]
ETFA_PONAB4.236e-3185.53Electron transfer flavoprotein subunit alpha, mito... [more]
ETFA_MOUSE4.236e-3185.53Electron transfer flavoprotein subunit alpha, mito... [more]
ETFA_MACFA4.236e-3185.53Electron transfer flavoprotein subunit alpha, mito... [more]
ETFA_HUMAN4.236e-3185.53Electron transfer flavoprotein subunit alpha, mito... [more]
ETFA_BRAJA1.610e-3087.50Electron transfer flavoprotein subunit alpha OS=Br... [more]
ETFA_BOVIN4.684e-3084.21Electron transfer flavoprotein subunit alpha, mito... [more]
ETFA_PARDE6.117e-3086.11Electron transfer flavoprotein subunit alpha OS=Pa... [more]
ETFA_CAEEL1.043e-2988.89Probable electron transfer flavoprotein subunit al... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-E03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728932 ID=EY728932; Name=EY728932; organism=Citrus sinensis; type=EST; length=695bp
CAGGTTTTGTACCGAACGACATGCAGGTCGGTCAGACCGGCAAAATCGTT
GCGCCACAGCTGTACATCGCCGTCGGTATCTCCGGCGCGATCCAGCATTT
GGCCGGTATGAAAGACTCCAAGGTGATCGTTGCGATCAACAAGGACGAAG
AAGCGCCGATCTTCCAGGTGGCTGATTACGGCCTGGTGGCAGACTTGTTC
GAAGCCGTACCCGAGTTGGAGAAGCTGGTCTAATCCAGCCGCTTCACTTA
TAAAGAGCCCGGTCTTTTGACCGGGCTTTTTTTTGCCCGGTAATTTTTGA
ATGGGAGAACCCTGCCATGGAATTGCGTCCCTGGACTGTACTGCTGGCCC
TGTCGCTGCTGCCGACGGTGTCGCTGGCGGCTGGCAAATGTGATCGCCTG
GTGATCACCGGCAGCCCGGACGCACCGCCTTATCTGTGGCGTGATCCCCG
GGACCCCACGCACTTGATCGGCGCCACCGCCGACATGTTGCAGCAAGTGG
CCAAGGACCTCGGAGTGAAAATCGACCTGCTGTACGGCGGCAAGCGCTCC
GTGGCTCTGGACGAATGCGCAGCGGACGCTGGACANCTTGCCGATGCCCG
TTGACCTCGACCTCCGAGCTCTGGATGCCCTCGATTACATCACCCGGCAT
GGGGTGCGAACGATTACCTGGTCTTGAACCCGCAGGATTCGGCCC
back to top