EY728930

Overview
NameEY728930
Unique NameEY728930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728930 vs. ExPASy Swiss-Prot
Match: CCR4F_ARATH (Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.057e-40
Identity = 92/197 (46.70%), Postives = 122/197 (61.93%), Query Frame = 1
Query:   13 DAWARELSLGNL--DETKA---ESESIREDGNAFLFALH-NTEDSSQSNFDHYAQSNLDPNSEELGEELIDDLSPALDSEAVNAEETTYNPSLWTPMEIATATGNADCTYLEHPLQLLSTYAEI*DCSRDRDSHGEPLVTTYNRRFKGAVDYILRAEGLHTVRGVAPIPQHAMQWTPRYPPQRWGGDHIGLASEMAF 585
            D +  E+ L  L  DE      + ES+ EDG  FL  LH N E+ SQ                    EL+ ++     SEA+N+++ TY+PS WTPMEIATATG+ + T +EH L+L STY+E+   +  RD +GEP+VT+Y+R F G VDYI R+EGL TVR +APIP+ AMQWTP +P  +WG DHI L SE+AF
Sbjct:  567 DTFVAEMKLDGLKLDEPVVFAQDEESLGEDGETFLAKLHDNNENLSQKG------------------ELVSEVPLKWSSEALNSDKITYSPSSWTPMEIATATGDPERTTVEHALELKSTYSEVEGQANTRDENGEPVVTSYHRCFMGTVDYIWRSEGLQTVRVLAPIPKQAMQWTPGFPTPKWGSDHIALVSELAF 745          
BLAST of EY728930 vs. ExPASy Swiss-Prot
Match: CCR4E_ARATH (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-18
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  274 WTPMEIATATGNADCTYLEHPLQLLSTYAEI*DCSRDRDSHGEPLVTTYNRRFKGAVDYILRAEGLHTVRGVAPIPQHAMQWTPRYPPQRWGGDHIGLASEMAFVED 594
            W+  E+  ATG  + T+++H L+L S Y+ +    R RD  GEPL TTY+ RF G VDYI   + L  VR +  +P   ++ T   P + WG DH+ +A E+ FV D
Sbjct:  346 WSQEELQLATGGQETTHVQHQLKLNSAYSGVPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKELVPVRVLETLPADVLRRTGGLPSENWGSDHLAIACELGFVND 452          
BLAST of EY728930 vs. ExPASy Swiss-Prot
Match: CCR4C_ARATH (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.177e-15
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  112 HNTEDSSQSNFDHYAQSN-LDPNSEELGEELIDDLSPALDSEAVNAEETTYN-PSLWTPMEIATATGNADCTYLEHPLQLLSTYAEI*DCSRDRDSHGEPLVTTYNRRFKGAVDYILRAEGLHTVRGVAPIPQHAMQWTPRYPPQRWGGDHIGLASEMAFVED 594
            ++T  S   NF   ++ N ++ + +EL  +     +  L++ + ++   T++  S WT  EI  ATG  +  +  HPL+L S+YA +   +  RDS GEPL T+Y+ +F G VDY+  ++GL   R +  +P   +  T   P Q  G DH+ L SE  F  D
Sbjct:  285 NSTPKSPLYNFLASSELNVMEHDKKELSGQKNCRPTKVLETGSKSSNTITFSFCSSWTKEEIRVATGQENSYWAAHPLKLNSSYASVKGSANTRDSVGEPLATSYHSKFLGTVDYLWYSDGLLPARVLDTLPIDVLCKTKGLPCQELGSDHLALVSEFVFEPD 447          
The following BLAST results are available for this feature:
BLAST of EY728930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCR4F_ARATH1.057e-4046.70Carbon catabolite repressor protein 4 homolog 6 OS... [more]
CCR4E_ARATH7.371e-1840.19Carbon catabolite repressor protein 4 homolog 5 OS... [more]
CCR4C_ARATH1.177e-1532.52Carbon catabolite repressor protein 4 homolog 3 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728930 ID=EY728930; Name=EY728930; organism=Citrus sinensis; type=EST; length=840bp
CACGCGTCCGCGGACGCGTGGGCTAGAGAATTATCTCTTGGAAACCTAGA
TGAAACCAAGGCAGAAAGTGAAAGTATTCGTGAAGATGGTAATGCATTTT
TATTTGCATTACATAACACTGAAGATTCCTCTCAATCAAACTTTGATCAC
TATGCACAATCCAATTTGGATCCTAATTCTGAAGAACTTGGGGAAGAACT
TATTGATGACTTGTCTCCTGCCTTGGATTCTGAGGCTGTCAATGCGGAGG
AGACTACTTATAATCCATCATTATGGACACCAATGGAAATAGCAACTGCA
ACAGGGAATGCAGACTGCACCTATTTGGAACACCCTTTACAGCTTCTAAG
CACATATGCAGAAATATAGGATTGCTCACGGGACAGGGATTCCCACGGAG
AGCCCTTGGTGACCACTTACAATAGACGTTTCAAGGGCGCAGTTGATTAC
ATTTTGCGTGCTGAAGGTCTCCACACAGTGAGGGGTGTTGCTCCAATACC
ACAACATGCTATGCAGTGGACACCACGATACCCACCACAGAGATGGGGCG
GCGATCATATTGGCTTGGCTTCTGAAATGGCATTCGTGGAGGACATCAGA
TGATTATGCTAAAGCTATCAGAAAAAGGTTGGTGATCCCATGATAAGAGG
CCACCGATGTCCTTGCCGATGATGAAGTGTGTATTTGGGCCTCCGGCCAC
CTGGTGGTATATATATAGGCATCCGGCTGGGGGGAGAGAAAGGGACTGTG
GGGCGCAGTGTGGTTTGCCCTGAGTCCCTGGCCTTGAAAACCGAGGCGGC
GTGTTGCCGGGTTCGTTACCGGGGGGGATAGGATGGCATA
back to top