EY728911

Overview
NameEY728911
Unique NameEY728911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: SKI2_YEAST (Antiviral helicase SKI2 OS=Saccharomyces cerevisiae GN=SKI2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 43/113 (38.05%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  371 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGDPAI 709
            +W  V  L ++++ F +E+I     A  + F +D FQ+ ++    +G SV V+A TS+GKT++             +  Y +P+KALSNQK R+F+ETF D N+GL+TGD  I
Sbjct:  301 EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI 410          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: YE02_SCHPO (Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe GN=SPAC17H9.02 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.475e-13
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  419 NEMIDVDELASIYDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGDPAI 709
            N+ I  D  A  Y F +D FQ ++I+   R  SV+VSA TS+GKT+I            +R+ Y +P+K+LSNQK RE    FGD  VGL+TGD +I
Sbjct:  110 NKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGD--VGLMTGDVSI 204          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: MTR4_YEAST (ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae GN=MTR4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  446 ASIYDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGDPAI 709
            A  Y F +D FQ ++I    RG SV+VSA TS+GKT++            +R+ Y +P+KALSNQK RE    FGD  VGL+TGD  I
Sbjct:  143 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGD--VGLMTGDITI 228          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: HELY_MYCLE (Probable helicase helY OS=Mycobacterium leprae GN=helY PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  425 MIDVDELASI---YDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGDPAI 709
            M D+ ELA       F +D FQ+ +  A  RG  V+V APT +GKT++             + FY TPLKALSNQK  +    +G N +GLLTGD ++
Sbjct:    1 MTDLAELARFTAELPFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKALSNQKYTDLTARYGRNRIGLLTGDQSV 98          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: HELY_MYCTU (Probable helicase helY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  422 EMIDVDELASIYDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGDPAI 709
            E+ ++D   +   F +D FQ+ +  A  RG  V+V APT +GKT++             + FY TPLKALSNQK  +    +G + +GLLTGD ++
Sbjct:    3 ELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSV 98          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: MTR4_CAEEL (mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  440 ELASIYDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGD 700
            E A  Y F++D FQ+ +I       SV+VSA TS+GKT++          + +R+ Y +P+KALSNQK RE  E F D  VGL+TGD
Sbjct:  117 EPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEFKD--VGLMTGD 201          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: YDVG_SCHPO (Uncharacterized helicase C6F12.16c OS=Schizosaccharomyces pombe GN=SPAC6F12.16c PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  446 ASIYDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGDPAI 709
            A  Y F +D FQ  SI    R  SV+VSA TS+GKT++            +R+ Y +P+KALSNQK RE    FGD  VGL+TGD  I
Sbjct:  192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGD--VGLMTGDVTI 277          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: SK2L2_MOUSE (Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  434 VDELASIYDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGDPAI 709
            V + A  Y F +D FQR +I+      SV+VSA TS+GKT+           + +R+ + +P+KALSNQK RE  E F D  VGL+TGD  I
Sbjct:  127 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQD--VGLMTGDVTI 216          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: SK2L2_HUMAN (Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  434 VDELASIYDFRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGDPAI 709
            V + A  Y F +D FQR +I+      SV+VSA TS+GKT+           + +R+ + +P+KALSNQK RE  E F D  VGL+TGD  I
Sbjct:  129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQD--VGLMTGDVTI 218          
BLAST of EY728911 vs. ExPASy Swiss-Prot
Match: SKIV2_HUMAN (Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 39/80 (48.75%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  461 FRIDKFQRSSIEAFFRGSSVVVSAPTSSGKTLIXXXXXXXXXXKTRRLFYXTPLKALSNQKVREFRETFGDNNVGLLTGD 700
            F  D FQ+ +I    R  SV V+A TS+GKT++             R  Y +P+KALSNQK R+FR TFGD  VGLLTGD
Sbjct:  309 FEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGD--VGLLTGD 386          
The following BLAST results are available for this feature:
BLAST of EY728911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SKI2_YEAST3.143e-1438.05Antiviral helicase SKI2 OS=Saccharomyces cerevisia... [more]
YE02_SCHPO3.475e-1344.33Uncharacterized helicase C17H9.02 OS=Schizosacchar... [more]
MTR4_YEAST7.741e-1346.59ATP-dependent RNA helicase DOB1 OS=Saccharomyces c... [more]
HELY_MYCLE2.252e-1240.82Probable helicase helY OS=Mycobacterium leprae GN=... [more]
HELY_MYCTU2.941e-1237.50Probable helicase helY OS=Mycobacterium tuberculos... [more]
MTR4_CAEEL3.842e-1244.83mRNA transport homolog 4 OS=Caenorhabditis elegans... [more]
YDVG_SCHPO6.553e-1246.59Uncharacterized helicase C6F12.16c OS=Schizosaccha... [more]
SK2L2_MOUSE1.907e-1143.48Superkiller viralicidic activity 2-like 2 OS=Mus m... [more]
SK2L2_HUMAN1.907e-1143.48Superkiller viralicidic activity 2-like 2 OS=Homo ... [more]
SKIV2_HUMAN4.247e-1148.75Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-C05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728911 ID=EY728911; Name=EY728911; organism=Citrus sinensis; type=EST; length=749bp
CCACGCGTCCGCGCGTTCAACCACATTCCCAGTCTTCGCCAATACGAAAC
CGTTCTCATTTCATCAGTTTCACACTCTCTCGCGTACCCTTGGCTTTTGC
ATACCCAAATCACTTCTATCATCTAATTCAATTCAATTTCAAGCCTCCTA
CAAGTCTCCTAAATCATTCTTCCCCACGGAGCACAAGCTCACCGACGCCG
ACGAAGCAGCAGATGAGTACGACGATGATATCGACGACGACGACGATGAA
GAAGCCGCCGACGAGTACGACGACGTTTCTGGCGAGGTCTCGGATGAAAT
TCAACAAAGTGATGACGAATTCGAAGTTTCTTCGGATTCGTCCCCGGCGC
CGTCTTGGCGCGAAGAGTTTAAATGGCAGAGAGTGGAGAAGTTGTGTAAT
GAAGTTAAAGAATTCGGCAATGAAATGATCGATGTCGATGAACTCGCCTC
TATTTACGACTTTCGTATCGACAAATTTCAGCGATCATCTATTGAAGCAT
TTTTTAGAGGTTCTTCGGTGGTGGTTTCTGCGCCGACNAGCAGCGGAAAA
ACTTTGATTGCTGAAGCTGCGGCAGTTGCCACAGTAGCTAAAACACGTCG
TTTATTCTATNACACACCTCTTAAGGCATTGTCTAACCAGAAAGTTCGTG
AGTTTCGGGAGACGTTTGGTGACAATAATGTTGGTCTTCTCACTGGAGAT
CCTGCCATCACAGAGAAGCTCAGAATTTAATATGACTACTGAAATTTTG
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