EY728898
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 6.773e-53 Identity = 77/121 (63.64%), Postives = 90/121 (74.38%), Query Frame = 3
Query: 72 AGASSVWML-NQSSFLGSCQQLSSVSKLVASSRPGPVPPSLFIVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTI 431
+G SV ++ N+S+FLG+ Q +V SS + +VEA T+ T EDR ARHSRIRKK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPISEE DY+SGPTI
Sbjct: 5 SGCGSVSLITNRSAFLGNGLQHRAVFLKPWSS--SSLQSRSMVVEAKTK--TSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTI 121 HSP 2 Score: 93.5893 bits (231), Expect = 6.773e-53 Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 2
Query: 428 DFAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
+ AKKVGE+IAKSCLEKGITKVAFDRGGYPYHGRI+ALA AAREHGLQF
Sbjct: 122 EVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.349e-40 Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 3
Query: 195 IVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEELDYSSGPTI 431
+V A + T + DR ARH R+RKK+ GT ERPRL VFRSNKHLY QVIDDTK TL SASTM K +S++L+YS+GPT+
Sbjct: 43 VVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTV 121 HSP 2 Score: 82.8037 bits (203), Expect = 2.349e-40 Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 2
Query: 428 DFAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
+ A+K+GE+IAKSCLEKGITKV FDRGG+ YHGRI+ALADAARE+GL F
Sbjct: 122 EVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.172e-33 Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 3
Query: 213 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEL 407
+ +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + E+L
Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKL 67 HSP 2 Score: 74.3294 bits (181), Expect = 3.172e-33 Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 2
Query: 419 WSHDFAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
W+ + AK+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct: 71 WNVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.172e-33 Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 3
Query: 213 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEL 407
+ +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + E+L
Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKL 67 HSP 2 Score: 74.3294 bits (181), Expect = 3.172e-33 Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 2
Query: 419 WSHDFAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
W+ + AK+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct: 71 WNVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima GN=rplR PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 3.172e-33 Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 3
Query: 213 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEL 407
+ +K+E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + E+L
Sbjct: 3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKL 67 HSP 2 Score: 74.3294 bits (181), Expect = 3.172e-33 Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 2
Query: 419 WSHDFAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
W+ + AK+VG +I K LEKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct: 71 WNVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RL18_THENN (50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.422e-32 Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 3
Query: 213 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEL 407
+ ++ E R RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT HTL SAST+ + E+L
Sbjct: 3 KKESRNERRIRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKL 67 HSP 2 Score: 73.559 bits (179), Expect = 3.422e-32 Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 2
Query: 419 WSHDFAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
W+ + AK+VG +I K +EKGI KV FDRGGY YHGR++ALAD ARE GL+F
Sbjct: 71 WNIEAAKEVGLLIGKRAIEKGIKKVVFDRGGYKYHGRVKALADGAREAGLEF 122
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus GN=rplR PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.362e-30 Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 2
Query: 434 AKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
AKKVGE++AK LEKGI KV FDRGGY YHGR++ALADAARE GL+F
Sbjct: 74 AKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120 HSP 2 Score: 76.6406 bits (187), Expect = 2.362e-30 Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 3
Query: 237 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQK 389
R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K
Sbjct: 11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDK 61
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.846e-30 Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 3
Query: 237 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQK 389
R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K
Sbjct: 11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK 61 HSP 2 Score: 75.8702 bits (185), Expect = 8.846e-30 Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 2
Query: 434 AKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
AKKVGE++AK LEKGI +V FDRGGY YHGR++ALADAARE GL+F
Sbjct: 74 AKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.313e-29 Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 2
Query: 434 AKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
AKKVGE++AK LEKGI KV FDRGGY YHGR++ALADAARE GL+F
Sbjct: 74 AKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120 HSP 2 Score: 72.7886 bits (177), Expect = 3.313e-29 Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 3
Query: 237 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 404
R RH+R+RKKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E
Sbjct: 11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDKEFDLE 66
BLAST of EY728898 vs. ExPASy Swiss-Prot
Match: RL18_BACLD (50S ribosomal protein L18 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplR PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.240e-28 Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 222 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEE 404
+K R RH+R+R K+ GTPERPRL VFRSNKH+Y QVIDD TL SAST+ K + E
Sbjct: 6 SKNAARLKRHARVRAKLSGTPERPRLNVFRSNKHIYAQVIDDVNGVTLVSASTLDKDFNAE 66 HSP 2 Score: 73.1738 bits (178), Expect = 1.240e-28 Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 2
Query: 434 AKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREHGLQF 574
A KVGE++AK EKGIT V FDRGGY YHGR++ALADAARE GL+F
Sbjct: 74 AAKVGELVAKRASEKGITNVVFDRGGYLYHGRVKALADAAREAGLEF 120 The following BLAST results are available for this feature:
BLAST of EY728898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >EY728898 ID=EY728898; Name=EY728898; organism=Citrus sinensis; type=EST; length=917bpback to top |