EY728891

Overview
NameEY728891
Unique NameEY728891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.050e-43
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  337 MAETGSAAATDFPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            M+ T  A+ TD P+KRPR     EA  +NNG   ME ++     K+P C+SS+IPGWFSEISPMWPGEAHSLKVEKILFQGKSDY +V+VFQS+  GK L+LDG
Sbjct:    1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDG 98          

HSP 2 Score: 70.4774 bits (171), Expect = 3.050e-43
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 2
Query:  614 GRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            G+VL   GVI LTE+DECAYQEMITHLPLCSI NPKK LVIG
Sbjct:   91 GKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIG 132          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.031e-40
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 1
Query:  358 AATDFPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            +ATD  LKRPR++      ++N G+  ME    D  K+P C S+VIPGWFSE+SPMWPGEAHSLKVEK+LFQGKSDY +V+VFQS+  GK L+LDG
Sbjct:    7 SATD--LKRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDG 94          

HSP 2 Score: 73.559 bits (179), Expect = 1.031e-40
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 2
Query:  614 GRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            G+VL   GVI LTE+DECAYQEMITHLPLCSIPNPKK LVIG
Sbjct:   87 GKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIG 128          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.668e-25
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 1
Query:  364 TDFPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            T+ P+KRPR++  E E   ANN+NNG      +  +    ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDY NV+VFQSS  GK L+LDG
Sbjct:   12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDG 101          

HSP 2 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  542 RLRKSCFRGSLITXMSWSFSLHIRGRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            ++ K  F+G         F     G+VL   GVI LTE+DECAYQEMITHLPLCSIPNPKK LVIG
Sbjct:   70 KVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIG 135          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.845e-24
Identity = 60/92 (65.22%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  361 ATDFPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            +TD PLKR R+D   E N  ++      +    QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDY +VMVFQS+  GK LILDG
Sbjct:   10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDG 93          

HSP 2 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  542 RLRKSCFRGSLITXMSWSFSLHIRGRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            ++ K  F+G         F     G+VL   GVI LTE+DECAYQEMITHLPLCSIPNPKK LVIG
Sbjct:   62 KVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIG 127          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.146e-24
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:  412 NNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            NNNNNG       ++K+  CISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDY +VMVFQS+  GK L+LDG
Sbjct:    7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDG 76          

HSP 2 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  542 RLRKSCFRGSLITXMSWSFSLHIRGRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            ++ K  F+G         F     G+VL   GVI LTE+DECAYQEMITHLPLCSIPNPKK LVIG
Sbjct:   45 KVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIG 110          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.479e-23
Identity = 56/76 (73.68%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  409 ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            AN+NNNG       +N+ P  ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDY NVMVFQSS  GK L+LDG
Sbjct:    4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDG 72          

HSP 2 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 38/66 (57.58%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  542 RLRKSCFRGSLITXMSWSFSLHIRGRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            ++ K  F+G         F     G+VL   GVI LTE+DECAYQEMI HLPLCSIPNPKK LVIG
Sbjct:   41 KVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIG 106          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.934e-23
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 1
Query:  439 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            ME  +NK+   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDY NVMVFQSS  GK LILDG
Sbjct:    1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDG 66          

HSP 2 Score: 75.0998 bits (183), Expect = 5.567e-13
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  542 RLRKSCFRGSLITXMSWSFSLHIRGRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            ++ K  F+G         F     G+VL   GVI LTE+DECAYQEMITHLPLCSIPNPKK LVIG
Sbjct:   35 KVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIG 100          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.012e-22
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 1
Query:  463 PDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            PD +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDY NVMVFQSS  GK L+LDG
Sbjct:   17 PDGVSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDG 74          

HSP 2 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  542 RLRKSCFRGSLITXMSWSFSLHIRGRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            ++ K  F+G         F     G+VL   GVI LTE+DECAYQEMI HLPLCSIP+PKK LVIG
Sbjct:   43 KVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPSPKKVLVIG 108          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.012e-22
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  352 SAAATDFPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            S    +  +K  RDD EK +N  +  +V M+++  +K P  + +SSVIPGWFSEISPMWPGEAHSLK+EKILFQGKS+Y  VMVFQSS  GK L+LDG
Sbjct:    5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDG 101          

HSP 2 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  542 RLRKSCFRGSLITXMSWSFSLHIRGRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            ++ K  F+G         F     G+VL   GVI LTE+DECAYQEMITHLPLCSIPNPKK LVIG
Sbjct:   70 KIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIG 135          
BLAST of EY728891 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.726e-22
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  406 EANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYXNVMVFQSSHTGKGLILDG 636
            E  N +NG      ++ K+   ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDY NVMVFQSS  GK L+LDG
Sbjct:    2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDG 74          

HSP 2 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  542 RLRKSCFRGSLITXMSWSFSLHIRGRVLFWMGVIXLTEKDECAYQEMITHLPLCSIPNPKKGLVIG 739
            ++ K  F+G         F     G+VL   GVI LTE+DECAYQEMITHLPLCSIPNPKK LVIG
Sbjct:   43 KVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIG 108          
The following BLAST results are available for this feature:
BLAST of EY728891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SPD2_ARATH3.050e-4362.50Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
SPD1_ARATH1.031e-4061.46Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC1.668e-2564.21Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD1_PEA1.845e-2465.22Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD2_DATST3.146e-2472.00Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPDE_NICSY3.479e-2373.68Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD1_DATST5.934e-2378.79Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPDE_COFAR1.012e-2287.93Spermidine synthase OS=Coffea arabica PE=2 SV=1[more]
SPD2_PEA1.012e-2259.18Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]
SPD1_HYONI1.726e-2268.83Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-H11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728891 ID=EY728891; Name=EY728891; organism=Citrus sinensis; type=EST; length=851bp
CCACGCGTCCGGGCATATATAAAGCGTTGCCCACCACCTTCGCACACTTT
AAACCAAGCGCAAGCGGCAGCAAACGCTAACACAAACACGAGCCGCATCT
TTGCGAAGCCAGATTTGTAACTTTTTATAATATATTCTCCCACCACTCGC
AGCTTGCAATTTTTTATTTTAATTTTTCTTTATATATAAAAGGCAAAGAG
GGACGGAGATTCTGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTC
GGCAGTCAGTTTTCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTT
TGAAAGCAGAGAGAATAATCAATAATAATATCTGTTATGGCGGAAACTGG
GTCTGCTGCTGCCACTGATTTTCCGTTGAAGAGGCCGAGAGATGACGGAG
AGAAGGAGGCTAATAACAACAATAACGGGAGTGTGTTGATGGAGATGGAC
TCTAACAAACAGCCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTC
TGAAATCAGCCCAATGTGGCCCGGTGAGGCACATTCATTGAAGGTTGAGA
AAATCTTGTTTCAGGGGAAGTCTGATTACCANAATGTCATGGTCTTTCAG
TCTTCACATACGGGGAAGGGTCTTATTTTGGATGGGGGTGATTCANCTTA
CTGAGAAGGATGAATGTGCATATCAAGAAATGATCACTCACCTTCCACTT
TGTTCAATTCCAAACCCCAAGAAAGGTCTGGTAATTGGTTGGAGGAGATG
GTGGGGGTCTGCGGGAAATATCTCGTCCTTTTCTGGTGGAAAGATTGAGA
TCTGGAAATGGAAAAATGGGGTTGGATGTTCTAACAATTTCCCCGGATGT
A
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