EY728881

Overview
NameEY728881
Unique NameEY728881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728881 vs. ExPASy Swiss-Prot
Match: COI1_ARATH (Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.318e-19
Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  195 KDRDAISLVCRRWYELDAHTRRHIXIALCYNTTPARLXRSFRNLESLKLKREPKAAMFNLNSRRLGADISRPGLREI-RAL*ISESQSF*KVNVPDSDFQVWAKTKEKFL-VLEPENCGGPQRGGL 566
            KDRD+ SLVCRRW+++D+ TR H+ +ALCY  TP RL R F NL SLKLK +P+AAMFNL     G  ++ P + EI   L   +S  F ++ V D D    AK +   L  L+ + C G    GL
Sbjct:   32 KDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVT-PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156          
BLAST of EY728881 vs. ExPASy Swiss-Prot
Match: FBX14_ARATH (F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.592e-12
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 3
Query:  198 DRDAISLVCRRWYELDAHTRRHIXIALCYNTTPARLXRSFRNLESLKLKREPKAAMFNLNSRRLGADISRPGLREIRAL*ISESQSF*KVNVPDSDFQVWAKTKEKFLVLEPENCGGPQRGGLHLI 575
            DR+A+SLVCR WY ++A TR  + I  CY+ +PARL   F+ + SL LK +P+ A FNL     GA  S       +A    E     ++ V D D  + A++   F  L    C G    G+ ++
Sbjct:   71 DRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIHRFKRVRSLVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHLKRMFVTDDDLALLAESFPGFKELTLVCCEGFGTSGIAIV 196          
BLAST of EY728881 vs. ExPASy Swiss-Prot
Match: AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.337e-11
Identity = 45/133 (33.83%), Postives = 66/133 (49.62%), Query Frame = 3
Query:  195 KDRDAISLVCRRWYELDAHTRRHIXIALCYNTTPARLXRSFRNLESLKLKREPKAAMFNLNSRRLGADI---------SRPGLREIRAL*ISESQSF*KVNVPDSDFQVWAKTKEKFLVLEPENCGGPQRGGL 566
            KDR+AISLVC+ WY+++ ++R+ + I  CY   P RL R F  L+SL LK +P  A FNL     G  +         SR GL E+R           ++ V D   ++ +++   F  L   +C G    GL
Sbjct:   20 KDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFPCLKSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARSRVGLEELRLK---------RMVVTDESLELLSRSFVNFKSLVLVSCEGFTTDGL 143          
The following BLAST results are available for this feature:
BLAST of EY728881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
COI1_ARATH8.318e-1945.24Coronatine-insensitive protein 1 OS=Arabidopsis th... [more]
FBX14_ARATH2.592e-1234.92F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX... [more]
AFB2_ARATH8.337e-1133.83Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-G10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728881 ID=EY728881; Name=EY728881; organism=Citrus sinensis; type=EST; length=815bp
CCACGCGTCCGCCCACGCGTCCGCTAAAATTAAAATAAAATAATTATATA
TATATATATATTTTCTTCTCGTGGCCGATCTACGAGATATTGGTTGGGCG
CGATGGAGGAGGACAAAAAGGTAAATAAAATGAACAGTGGGATGCCGGAC
ATAGACACGGTGTTCGAATGCGTGATTCCGTACGTAGAGGATCCAAGGAC
AGAGACGCCATCTCCCTAGTGTGTCGGAGGTGGTACGAGCTCGACGCCCA
CACTCGCAGGCACATCANCATCGCTTTGTGCTACAACACCACGCCTGCGC
GTCTGCNGCGTTCTTTCCGAAACTTGGAGTCGTTGAAGTTGAAAAGGGAA
CCGAAGGCCGCGATGTTTAATTTGAATTCCCGAAGATTGGGGGCCGATAT
CTCACGCCCTGGGTTGAGGGAAATCCGGGCCCTTTAAATCTCTGAAAGTC
AATCCTTTTAGAAGGTGAATGTCCCGGATTCGGATTTCCAGGTTTGGGCC
AAAACAAAGGAAAAATTTCTTGTTTTGGAACCTGAAAATTGTGGGGGTCC
CCAAAGGGGGGGGCTTCACCTTATCCCCCTGGCAGGGAAAAAAAATTGGT
GTTGTGGAGGGACTCATTTTTTGAAAAAAAAGGGACAGGCTTCATAAACT
TCTTTTATAAACCACTTTTTGAAAATTAAATTTTTTATGAACGACTTTTT
CCAAGTAAGTGTGAAAACCTAGACTTTTCCCAAAAATGGTCGTCCTTATC
TCTGGTAAACCATTGACTGCAAACTTTGGGACCTGTTAATTCTTTCAAAT
TGCACTGCTTAAAAG
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