EY728807

Overview
NameEY728807
Unique NameEY728807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728807 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.053e-49
Identity = 103/182 (56.59%), Postives = 122/182 (67.03%), Query Frame = 2
Query:   83 PKFSTATKGNHFGLSGNKSLAAVSSNSMYWPNRAQNVTESFAPIVNKECSEKRQGNGNTCRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDA*KSCLRSPQESQSRHIRICTKVHMQGIAFGMAVDLTPFDCHEHLLKKLEDMFDIDGHLCGST 628
            P FS   K   FG  GNKS   VS  S +WP  A +  ESFA   N E +EK+Q NGN CRLFG +LV+N NV+E   A ++SGA+  D+ +P  + DS Q SEP NIN+SD+PS S D  KS LRSPQESQSR IR CTKVHMQG A G A+DLT  +C+E L KKLE+MFDI G L  ST
Sbjct:  407 PLFSPPAKAATFGHGGNKSFG-VSIGSAFWPTNADSAAESFASAFNNESTEKKQTNGNVCRLFGFELVENVNVDECFSAASVSGAVAVDQPVPSNEFDSGQQSEPLNINQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLEST 587          
BLAST of EY728807 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.785e-32
Identity = 85/198 (42.93%), Postives = 120/198 (60.61%), Query Frame = 2
Query:   29 SSAFSYCDSPQGRDLYPSPKFSTATKGNHFGLSGNKSLAAVSSNSMYWPNRAQNVTESFAPIVNKECSEKRQGNGNT-CRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDA*KSCLRSPQESQSRHIRICTKVHMQGIAFGMAVDLTPFDCHEHLLKKLEDMFDIDGHLC 619
            +   S+ +  + R+++PS   S  +  +H   + +K+  ++ SN  YW  R  + T+SF+   NK   E++Q      CRLFGI++  +S VEEA PA T+SG +G D+ +  +D DSDQ S+PSN N+SD P  S +      RSP ESQSR +R CTKV MQG+A G AVDLT  + +  L  KLE+MFDI G LC
Sbjct:  403 AQTLSFSEPQRAREIFPSIPASIFSASSHVEFN-SKNEPSILSNQFYWSMR-DSKTDSFSASTNKTRVERKQEPTTMGCRLFGIEI--SSAVEEALPAATVSG-VGYDQTVLSVDVDSDQISQPSNGNKSDAPGTSSE------RSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLC 589          
BLAST of EY728807 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.861e-30
Identity = 88/209 (42.11%), Postives = 124/209 (59.33%), Query Frame = 2
Query:   14 KSHVESS-AFSYCDSPQGRDLYPS---PKFSTATKGNHFGLSGNKSLAAVSSNSMYWPNRAQNVTESFAPIVNKECSEKRQGNGNT-CRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDA*KSCLRSPQESQSRHIRICTKVHMQGIAFGMAVDLTPFDCHEHLLKKLEDMFDIDGHLCGS 625
            KS  ES+  FS+    + ++LYPS   P FST+    + G S     +A+S+   YWP R +    S++  ++K  SEK+Q   +  CRLFGI++  +S VE  SP   +SG +G D+    +DA+SDQ S+PS+ N+SD P+ S +       SP E+QSR +R CTKV MQG+A G AVDLT    ++ L  KLE+MFDI G L  S
Sbjct:  397 KSSAESTQGFSFSGLQRTQELYPSSPNPIFSTSL---NVGFSTKNEPSALSNKHFYWPMR-ETRANSYSASISKVPSEKKQEPSSAGCRLFGIEI--SSAVEATSPLAAVSG-VGQDQPAASVDAESDQLSQPSHANKSDAPAASSEP------SPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSAS 592          
The following BLAST results are available for this feature:
BLAST of EY728807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARFA_ARATH3.053e-4956.59Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ5.785e-3242.93Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ1.861e-3042.11Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-H03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728807 ID=EY728807; Name=EY728807; organism=Citrus sinensis; type=EST; length=756bp
CCACGCGTCCGGGAAATCTCACGTTGAATCTTCAGCTTTCTCATACTGTG
ACTCACCGCAAGGACGCGACCTCTATCCATCACCTAAGTTTTCCACTGCC
ACGAAGGGCAACCATTTTGGTTTGAGTGGAAATAAGTCACTGGCTGCTGT
TTCCAGCAACTCAATGTACTGGCCCAACCGTGCACAAAATGTAACAGAAT
CATTTGCTCCAATTGTGAACAAGGAATGCAGTGAAAAGAGACAGGGCAAT
GGGAACACCTGCAGGCTATTTGGCATTCAGCTCGTTGACAACTCGAATGT
AGAAGAAGCTTCACCTGCTTTTACCATGTCTGGAGCAATGGGGGATGATC
GAGCAATTCCATGTTTAGATGCAGACTCTGACCAGCATTCTGAACCATCA
AATATTAATCGATCTGACGTTCCTTCTGTAAGTTGTGATGCATAGAAATC
GTGCCTGAGATCTCCTCAGGAGTCTCAAAGCAGGCACATTCGAATTTGCA
CAAAGGTTCATATGCAAGGAATTGCATTTGGGATGGCTGTTGATTTGACA
CCATTTGACTGTCATGAACACCTTCTCAAGAAACTGGAGGATATGTTTGA
CATTGACGGACACTTGTGTGGATCAACCCACAATTGCGCATGGTCCTACC
TGATGATGACAATCACTCCACGATGGCTCGAGCAGCTGCAAGGCTCGATC
TTTGGTTGAGGTCTGGTCTCTATTCCTTTATTTTGCTCTCAGCCTTGAGC
CCACGT
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