EY728781

Overview
NameEY728781
Unique NameEY728781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11781 contig Csv1_Contig11781:1..383. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728781 vs. ExPASy Swiss-Prot
Match: EPHD_MYCTU (Probable oxidoreductase ephD OS=Mycobacterium tuberculosis GN=ephD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = -3
Query:   22 VTAPDGVTLAVQESGNPDGPTLLFIHGLLGSHLNWEAQVNSPQL-QRFRMITYDLRGHGLSSKPAEDAAYIEGRRWADDLNAVITASHADKPL-LVGWSLGGAVISNYLARYGDS 360
            V +PDGV +AV   GNPDGPT++ +HG   SH+ W+  V  P L +RFR++ YD RG G SS P   +AY     +ADD +AVI      +P+ ++    G   +  YL R G S
Sbjct:   11 VDSPDGVRIAVYHEGNPDGPTVVLVHGFPDSHVLWDGVV--PLLAERFRIVRYDNRGVGRSSVPKPISAYTMA-HFADDFDAVIGELSPGEPVHVLAHDWGSVGVWEYLRRPGAS 122          
BLAST of EY728781 vs. ExPASy Swiss-Prot
Match: EPHD_MYCBO (Probable oxidoreductase ephD OS=Mycobacterium bovis GN=ephD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = -3
Query:   22 VTAPDGVTLAVQESGNPDGPTLLFIHGLLGSHLNWEAQVNSPQL-QRFRMITYDLRGHGLSSKPAEDAAYIEGRRWADDLNAVITASHADKPL-LVGWSLGGAVISNYLARYGDS 360
            V +PDGV +AV   GNPDGPT++ +HG   SH+ W+  V  P L +RFR++ YD RG G SS P   +AY     +ADD +AVI      +P+ ++    G   +  YL R G S
Sbjct:   11 VDSPDGVRIAVYHEGNPDGPTVVLVHGFPDSHVLWDGVV--PLLAERFRIVRYDNRGVGRSSVPKPISAYTMA-HFADDFDAVIGELSPGEPVHVLAHDWGSVGVWEYLRRPGAS 122          
BLAST of EY728781 vs. ExPASy Swiss-Prot
Match: YISY_BACSU (AB hydrolase superfamily protein yisY OS=Bacillus subtilis GN=yisY PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = -3
Query:   16 VTAPDGVTLAVQESGNPDGPTLLFIHGLLGSHLNWEAQVNSPQLQRFRMITYDLRGHGLSSKPAEDAAYIEGRRWADDLNAVITASHADKPLLVGWSLGGAVISNYLARYGDSQI 360
            +   + VTL V++ G+  G  ++F+HG   +H  +E Q+N    + FR I  DLRG+G S +P E   Y      ADD+ AVI     +  +L G+S+GGA+   Y+AR+  + +
Sbjct:    5 IKTEEHVTLFVEDIGH--GRPIIFLHGWPLNHKMFEYQMNELPKRGFRFIGVDLRGYGQSDRPWEGYDY---DTMADDVKAVIYTLQLENAILAGFSMGGAIAIRYMARHEGADV 114          
The following BLAST results are available for this feature:
BLAST of EY728781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
EPHD_MYCTU1.919e-1441.74Probable oxidoreductase ephD OS=Mycobacterium tube... [more]
EPHD_MYCBO1.919e-1441.74Probable oxidoreductase ephD OS=Mycobacterium bovi... [more]
YISY_BACSU1.520e-1134.78AB hydrolase superfamily protein yisY OS=Bacillus ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-E05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728781 ID=EY728781; Name=EY728781; organism=Citrus sinensis; type=EST; length=383bp
ATACACCGCGCCCGCAATCTGGCTATCGCCGTACCGGGCCAGGTAGTTGG
AAATCACTGCGCCGCCCAGCGACCAGCCGACCAGTAAGGGTTTGTCGGCA
TGGGAGGCGGTTATCACCGCATTGAGATCATCCGCCCAGCGACGGCCTTC
GATGTAGGCCGCGTCTTCGGCGGGTTTGCTCGAAAGGCCATGGCCGCGCA
GGTCGTAGGTGATCATGCGAAAACGTTGTAGTTGCGGGCTGTTTACCTGC
GCTTCCCAGTTCAAGTGACTGCCCAGCAAGCCGTGAATGAAGAGCAGGGT
GGGGCCGTCGGGGTTTCCTGATTCCTGGACCGCCAGGGTGACGCCGTCCG
GCGCGGTAACGGTATAGGTGTCGGTCTGGGCAA
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