EY728753

Overview
NameEY728753
Unique NameEY728753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728753_ssr111 microsatellite EY728753_ssr111:111..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB1_RAT (5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 1.412e-14
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  276 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 533
            P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G HQYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 160          
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB1_MOUSE (5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.412e-14
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  276 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 533
            P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G HQYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 160          
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB1_PONAB (5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  276 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 533
            P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G HQYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 160          
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB1_HUMAN (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  276 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 533
            P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G HQYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 160          
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB1_BOVIN (5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  276 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 533
            P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G HQYKF VDG+W HD  +P ++S+ G VN V+   + +F
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVKKTDF 160          
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB1_PIG (5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.366e-14
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  276 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVL 512
            P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G HQYKF VDG+W HD  +P ++S+ G VN ++
Sbjct:   44 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNII 118          
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 3
Query:  291 WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 533
            W  GG+ VF+SGSFN WS  +P+         F  I  +P G HQYKF VDG+W HD  +P ++S+ G +N ++   + +F
Sbjct:   82 WSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDF 159          
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 3
Query:  291 WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 533
            W  GG+ VF+SGSFN WS  +P+         F  I  +P G HQYKF VDG+W HD  +P ++S+ G +N ++   + +F
Sbjct:   82 WSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDF 159          
BLAST of EY728753 vs. ExPASy Swiss-Prot
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 3
Query:  291 WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 533
            W  GG+ VF+SGSFN WS  +P+         F  I  +P G HQYKF VDG+W HD  +P ++S+ G +N ++   + +F
Sbjct:   83 WSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDF 160          
The following BLAST results are available for this feature:
BLAST of EY728753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AAKB1_RAT1.412e-1443.025'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_MOUSE1.412e-1443.025'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_PONAB1.844e-1443.025'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_HUMAN1.844e-1443.025'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_BOVIN1.844e-1444.195'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_PIG5.366e-1445.575'-AMP-activated protein kinase subunit beta-1 (Fr... [more]
AAKB2_RAT7.749e-1340.745'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_MOUSE7.749e-1340.745'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_HUMAN7.749e-1340.745'-AMP-activated protein kinase subunit beta-2 OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-B02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728753 ID=EY728753; Name=EY728753; organism=Citrus sinensis; type=EST; length=886bp
CACGCGTCCGCATTCTGTGAAATATACCTATTTCTTCTTGTTCCCCTTTT
TATCCTTTGTTAGGGTTTATTATTTATGTGAGTTTTTGCTTTGATTCTGT
CAAATTAGGGTTTATTTATTTATTTATTTTACATTCCGTACAATTTCACT
GTTAAGTAACAAAATTTGATATATTTTTAAGAAGATATTGATAATTGATG
AATACGGGTCAAATGTTCAATCCGGGCATGGATGCTGCCCGGGAACCCGC
CTCTGTGCCAGACACGGTGCTGATTCCAATGCGCTTCGTGTGGCCTTATG
GAGGGAGGAGTGTTTTTCTTAGTGGCTCTTTCAATAGGTGGTCTGAGCTG
TTGCCTATGTCGCCGGTGGAAGGTTGCCCTACTGTTTTTCAGATTATTTG
GAGCATTCCCCCAGGATACCACCAGTACAAGTTTTGTGTGGATGGAGAAT
GGAGACACGACGAACACCAACCTTTCATAAGTAGCGAATATGGGATTGTA
AACACTGTTCTTTTGGCTACAGAACCTAATTTTATGCATGGAATTACATC
AGGAATGCCTTCTGGATCTAACATGGATGTGGATAATGANGCATTTCAGC
GTCTGGTTCAATTTCTGATGGTTCTTTGACTGANGCAGCAGAAAGAATAT
CCGAAGCTGACTTACAGGTTTCTCGTCATCGTGTTTCTGTATTCTTGTCT
ACACACACTGCTTATGAGTTTACTTCCGAGTCANGCAAGGTTGTAGCATT
GGACATTGATCTACCTGTAAAACCAGCATTCATATACTTTATGAGCAGGG
TATCTCCATGGCTCCTCTTTGGGACTTCACCAGGCGCGGTTNGTTGGGAG
TCTTAGTGCGTCAGATTTATATGGATTTTAAAGAAC
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