EY728746

Overview
NameEY728746
Unique NameEY728746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728746_ssr45 microsatellite EY728746_ssr45:45..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728746 vs. ExPASy Swiss-Prot
Match: COI1_ARATH (Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.093e-15
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 3 
Query:  195 KDRDAISLVCRRWYELDATTRRHITIALCYT 287
            KDRD+ SLVCRRW+++D+ TR H+T+ALCYT
Sbjct:   32 KDRDSASLVCRRWFKIDSETREHVTMALCYT 62

HSP 2 Score: 44.2838 bits (103), Expect = 6.093e-15
Identity = 40/138 (28.99%), Postives = 56/138 (40.58%), Query Frame = 2 
Query:  344 GXPRAGMFNWIPEDGAGSFRPGLKEIPAPFNSLNSNPLKEDIVREFRFHGFGPKQKEKFSVLEPEKSGGFSHERGLSH*TLLGGDKKTFVWGESPPFFEKKGAAFSNLGFNLKILEKLKSFWTRSFKIFC*NLDFIPK 757
            G PRA MFN IPE+  G   P + EI      L S   +  IV +         + +    L+ +K  GF+ +  LS  T     K   +  E   F EK G     L  +   LE L  + T   KI   +L+ I +
Sbjct:   82 GKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM--EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217
The following BLAST results are available for this feature:
BLAST of EY728746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COI1_ARATH6.093e-1567.74Coronatine-insensitive protein 1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-A05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728746 ID=EY728746; Name=EY728746; organism=Citrus sinensis; type=EST; length=863bp
CCACGCGTCCGCCCACGCGTCCGCTAAAATTAAAATAAAATAATTATATA
TATATATATATTTTCTTCTCGTGGCCGATCTACGAGATATTGGTTGGGCG
CGATGGAGGAGGACAAAAAGGTAAATAAAATGAACAGTGGGATGCCGGAC
ATAGACACGGTGTTCGAATGCGTGATTCCGTACGTAGAGGATCCAAGGAC
AGAGACGCCATCTCCCTAGTGTGTCGGAGGTGGTACGAGCTCGACGCCAC
CACTCGCAGGCACATCACAATCGCTTTGTGCTACACCACACGCCTGCGCG
TCTGCGGCGTCGTTTCCGAAACTTGGAGTTCTTGAATTTGAANGGAANCC
CGAGGGCGGGGATGTTTAATTGGATTCCCGAGGATGGGGCCGGATCCTTC
CGCCCCGGGTTGAAGGAAATTCCGGCCCCCTTTAATTCCCTGAATTCCAA
TCCCCTTAAGGAGGATATTGTCAGGGAATTTCGATTCCACGGTTTTGGCC
CAAAACAAAAGGAGAAATTTTCCGTTTTGGAACCTGAAAAAAGTGGGGGG
TTCTCCCACGAGAGGGGGCTTTCCCATTAAACCCTCCTGGGGGGGGATAA
AAAAACTTTTGTTTGGGGGGAAAGCCCCCCTTTTTTTGAAAAAAAGGGGG
CGGCGTTCTCAAACCTTGGTTTTAATTTAAAAATTCTTGAAAAACTAAAA
TCTTTTTGGACCCGCTCTTTCAAGATCTTTTGTTAAAACCTTGACTTTAT
TCCCAAAAAGTGGGGGCCCCATTTCTCGGAAAACCAATGGAGGGGGAACC
TTGGGACCCGTGTTAATTTTTACCATGGCCCCGTGTTTAAAAAGATTGGC
GCGGGCCCTCCAC
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