EY728722

Overview
NameEY728722
Unique NameEY728722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728722_ssr20 microsatellite EY728722_ssr20:20..43. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728722_ssr94 microsatellite EY728722_ssr94:94..105. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY728722 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.594e-16
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:  225 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDAFENGSSGDTSED 470
            PR+RWT  LH  FVHAV+LLGG  +ATPK VL++MDVK LT++HVKSHLQMYR  + T         S +       D  ED
Sbjct:   24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKPEESSSPSSRRRRRQDNEED 105
[Close]
BLAST of EY728722 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.062e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 3 
Query:  225 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 392
            PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K
Sbjct:   35 PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
The following BLAST results are available for this feature:
BLAST of EY728722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MYBF_ARATH1.594e-1652.44Putative Myb family transcription factor At1g14600... [more]
APL_ARATH4.062e-1258.93Myb family transcription factor APL OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-G01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728722 ID=EY728722; Name=EY728722; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGCAAAACCCTCATCATCATCATCATCATCATCAAGCTTCT
CATGCTTTTCCATTCCCTCATCATCAGCAACAGCCATTGGATTCTCCTCC
TCCTCCATCTTTGGTAGCTAATAATAACACAAGTACCTCGAGTTTGAATT
CTTTTCAGTCACAACAAGGTTTGATGAGATCAAGATTCATGTCGAGGTTT
CCGGCAAAACGAAGCATGAGAGCTCCGCGGATGCGATGGACAACGACTCT
TCATGCTCGCTTTGTTCATGCTGTTGAGTTATTGGGTGGCCATGAAAGAG
CAACTCCAAAATCAGTTCTTGAGCTAATGGATGTGAAAGATCTTACCTTG
GCTCATGTTAAATCTCACTTACAGATGTATCGAACCGTCAAGACCACCGA
TAGAGCAGCAGCTTCTTCAGGACAATCAGATGCATTTGAAAATGGATCAT
CTGGGGATACTTCTGAAGATATAATGTTTGGAATTCAACACCCGAGAAGG
CCCGAGACATCATCTATTCAACAACAGGAAGAACAAGTAATGGTCTCTGG
AGGCACTCTTCAAGCAGGGAAGCTTGGTTGCATGGCAAAACAAAGGATTC
TGCTAATAAACCTGCCGTCTCTTGAGGGAGGTGGATCCAAATGCTNANCT
ATGAAGGATGACTGATGTATGTAAGCTCACCAAACATATCAGCGACAACC
CCGAAAAGCGCAAATCTTGAGGTTACCTTGGGGCCGGCAGCTTGATTTGT
CCTCTACTTGCTACTAACCCCAGGACTACTACTATAACTCTGATACCACA
ACCACTACTATGGTCATTTTGGAATAATATCTTTCTCCTTCTCTTAAGGG
GACCGATCGCTATGTGACTGAATAAGAAAAGATCGAGGACCGGCGGCTGG
GGGGGGAACTACTC
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