EY728685

Overview
NameEY728685
Unique NameEY728685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.164e-14
Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 2
Query:  317 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT--QKNDQLKRIXXXXXXXXXXXXKYHHKISKWGEVIWC**SIPNPSETPFLPDRGPIT 673
            EI  +     ++ +D +   C +C  GG LLCCD+CP +YH+ CL+PPL  IPNG W CP+CT      ++++I                 I KWG+        P+P+  P  PD  P T
Sbjct:  425 EILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKIL----------------IWKWGQP-------PSPTPVPRPPDADPNT 522          

HSP 2 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 2
Query:  266 TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520
            +S S +   +AK++ K E         +  +  Y   C +C  GG ++ CD+CPR YH+ CLDP +++ P G+W CP C ++  Q
Sbjct:  332 SSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 413          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 2
Query:  317 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT--QKNDQLKRIXXXXXXXXXXXXKYHHKISKWGEVIWC**SIPNPSETPFLPDRGPIT 673
            EI  +     ++ +D +   C +C  GG LLCCD+CP +YH+ CL+PPL  IPNG W CP+CT      ++++I                 I KWG+        P+P+  P  PD  P T
Sbjct:  432 EILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKIL----------------IWKWGQP-------PSPTPVPRPPDADPNT 529          

HSP 2 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  263 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520
            V+  S   +  ++++L+      +   +    DGY  +    C +C  GG ++ CD+CPR YH+ CLDP +++ P G+W CP C ++  Q
Sbjct:  331 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 420          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  311 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT 505
            K++ + +     ++  D +   C +C  GG LLCCD+CP +YHL CL+PPL  IPNG W CP+CT
Sbjct:  397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCT 461          

HSP 2 Score: 75.8702 bits (185), Expect = 3.498e-13
Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 2
Query:  143 KMKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEEN--------LVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520
            K K     T+ +  R   +  KR+K     G S+ ++E          + S S R+  SA    K++    R   KK+ +DG  YE      C +C  GG ++ CD+CPR YHL CLDP L++ P G+W CP C ++  Q
Sbjct:  263 KKKGKGKKTAGLKFRFGGISNKRKK-----GSSSEEDEREESDFDSASIHSASVRSECSAALGKKSK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQ 393          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 2
Query:  257 NLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT 505
            +LV  E   + P   +       AD  + +++ +D +   C +C  GG LLCCDSCP  YH  CL+PPL  IP+G W+CP+C+
Sbjct:  400 HLVCLEPELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482          

HSP 2 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 2
Query:  269 SESPRNTPSAKRRLKNEINADRSSTKKK----GNDGYYYE---CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKC 502
            S +P     AK ++ N+        K K    G DG +     C +C  GG ++ CD+CPR YHL CL+P L   P G+W CP C
Sbjct:  337 SGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC 421          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 2
Query:  344 KKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT 505
            +K+  D +   C +C  GG LLCCD+C  +YH+ CL+PPL  IPNG W CP+CT
Sbjct:  448 EKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 501          

HSP 2 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 2
Query:  272 ESPRNTPSAKR----RLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520
            + P  T   KR    R K ++    +   ++  DGY  +    C +C  GG ++ CD+CPR YHL CLDP L R P G+W CP C ++  Q
Sbjct:  339 DGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 429          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  335 SSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKC 502
            ++ K+K  D  Y  C +C  GG+LLCCDSCP  YH  CL PPLK IP G W CP+C
Sbjct:   26 NAKKQKFRDEEY--CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2
Query:  374 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520
            EC +C  GG L+CCD CPR +HL CL PPL+ IP+G W+C  C Q   Q
Sbjct:  298 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 346          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2
Query:  374 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQ 508
            EC +C  GG L+CCD CPR +HL CL PPL+ IP+G W+C  C Q
Sbjct:  300 ECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQ 344          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: PHF12_MOUSE (PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 2
Query:  239 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL--KRIPNGRWQCPKCT---QKNDQLKRI 532
            S G  E +    +P  T  A++R +      R S +   +D     C  C  GG+LLCCD CP  +HLQC +PPL  + +P G W C +CT   +K +Q K +
Sbjct:   17 SGGLMEQIQALLAPPKTDEAEKRSRKPEKESRRSGRATNHDS----CDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKEL 115          
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: PHF12_HUMAN (PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.616e-12
Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 2
Query:  239 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL--KRIPNGRWQCPKCT---QKNDQLKRI 532
            S G  E +    +P  T  A++R +      R S +   +D     C  C  GG+LLCCD CP  +HLQC +PPL  + +P G W C +CT   +K +Q K +
Sbjct:   17 SGGLMEQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDS----CDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKEL 115          
The following BLAST results are available for this feature:
BLAST of EY728685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CHD4_MOUSE3.164e-1434.71Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD4_HUMAN4.132e-1434.71Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]
CHD5_HUMAN7.048e-1446.15Chromodomain-helicase-DNA-binding protein 5 OS=Hom... [more]
CHDM_DROME2.678e-1339.76Chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
CHD3_HUMAN1.018e-1251.85Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]
CHD3_DROME1.018e-1255.36Chromodomain-helicase-DNA-binding protein 3 OS=Dro... [more]
AIRE_HUMAN1.018e-1255.10Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 ... [more]
AIRE_MOUSE3.867e-1257.78Autoimmune regulator OS=Mus musculus GN=Aire PE=1 ... [more]
PHF12_MOUSE6.597e-1235.92PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=... [more]
PHF12_HUMAN8.616e-1235.92PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-C01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728685 ID=EY728685; Name=EY728685; organism=Citrus sinensis; type=EST; length=886bp
CACGCGTCCGGGAAGATTGGAATTGCTTCTTCAGAAATTTCAGAGTTGAG
ATTGCTATCAAGCTCTGATATCTCTGCTTCTTCATTGACTCGTGACATGG
GCTTACTGCCACTGGTAGTGACAATGTAAGACTCAGCACTGAAAGATGAA
GGATAACAGTTCATCAACTAGTACAATGATTAATAGAAACTGGGTCTTGA
AGCGAAAAAGAAGAAAGTTGCCTTGTGGACCTGGTCTATCCAATGGTAAA
GAAGAGAACTTAGTGACCTCAGAATCTCCAAGGAATACACCTTCAGCTAA
ACGCAGGCTAAAGAATGAAATAAATGCTGATCGATCTTCAACCAAGAAGA
AAGGAAATGATGGGTATTACTATGAATGTGTGATCTGTGATCTTGGCGGT
AACCTGTTATGTTGCGATAGCTGTCCCAGAACCTATCATCTTCAGTGCCT
TGATCCACCTCTTAAGCGAATTCCGAATGGAAGATGGCAATGCCCGAAGT
GCACACAGAAAAATGACCAGCTCAAGCGCATCAGCGATCTGGATTCATCT
CAAAGCGAGCAAGATCAAAAATATCACCATAAAATCTCCAAGTGGGGTGA
AGTCATCTGGTGCTGATAAAGTATCCCAAATCCTTCGGAAACTCCATTCT
TGCCAGACAGAGGTCCAATAACGGAANATCTGTTTTGGGTCTCCGGAGTG
AAACCCGTTGACAAGAGTTTGGATTCCTCTCAAGTAGATGTATCTTGTAG
CCCCCAGGGTGAGCAATGCGTCGGCTGGTGTTCTTGGTGAAGGGTAGTTC
ACTTGGTCCGGATGATCATAACGAAAACCAGTGAGAGTGTCTGTCCGCGA
AGTCCAGTTGGGAAGACCAAGAGTGTCTGCCTGGGG
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