EY728685
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.164e-14 Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 2 Query: 317 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT--QKNDQLKRIXXXXXXXXXXXXKYHHKISKWGEVIWC**SIPNPSETPFLPDRGPIT 673 EI + ++ +D + C +C GG LLCCD+CP +YH+ CL+PPL IPNG W CP+CT ++++I I KWG+ P+P+ P PD P T Sbjct: 425 EILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKIL----------------IWKWGQP-------PSPTPVPRPPDADPNT 522 HSP 2 Score: 72.0182 bits (175), Expect = 5.051e-12 Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 2 Query: 266 TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520 +S S + +AK++ K E + + Y C +C GG ++ CD+CPR YH+ CLDP +++ P G+W CP C ++ Q Sbjct: 332 SSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 413
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14 Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 2 Query: 317 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT--QKNDQLKRIXXXXXXXXXXXXKYHHKISKWGEVIWC**SIPNPSETPFLPDRGPIT 673 EI + ++ +D + C +C GG LLCCD+CP +YH+ CL+PPL IPNG W CP+CT ++++I I KWG+ P+P+ P PD P T Sbjct: 432 EILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKIL----------------IWKWGQP-------PSPTPVPRPPDADPNT 529 HSP 2 Score: 72.0182 bits (175), Expect = 5.051e-12 Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2 Query: 263 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520 V+ S + ++++L+ + + DGY + C +C GG ++ CD+CPR YH+ CLDP +++ P G+W CP C ++ Q Sbjct: 331 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 420
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14 Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 2 Query: 311 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT 505 K++ + + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG W CP+CT Sbjct: 397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCT 461 HSP 2 Score: 75.8702 bits (185), Expect = 3.498e-13 Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 2 Query: 143 KMKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEEN--------LVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520 K K T+ + R + KR+K G S+ ++E + S S R+ SA K++ R KK+ +DG YE C +C GG ++ CD+CPR YHL CLDP L++ P G+W CP C ++ Q Sbjct: 263 KKKGKGKKTAGLKFRFGGISNKRKK-----GSSSEEDEREESDFDSASIHSASVRSECSAALGKKSK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQ 393
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13 Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 2 Query: 257 NLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT 505 +LV E + P + AD + +++ +D + C +C GG LLCCDSCP YH CL+PPL IP+G W+CP+C+ Sbjct: 400 HLVCLEPELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482 HSP 2 Score: 68.9366 bits (167), Expect = 4.276e-11 Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 2 Query: 269 SESPRNTPSAKRRLKNEINADRSSTKKK----GNDGYYYE---CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKC 502 S +P AK ++ N+ K K G DG + C +C GG ++ CD+CPR YHL CL+P L P G+W CP C Sbjct: 337 SGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC 421
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12 Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 2 Query: 344 KKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCT 505 +K+ D + C +C GG LLCCD+C +YH+ CL+PPL IPNG W CP+CT Sbjct: 448 EKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 501 HSP 2 Score: 72.0182 bits (175), Expect = 5.051e-12 Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 2 Query: 272 ESPRNTPSAKR----RLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520 + P T KR R K ++ + ++ DGY + C +C GG ++ CD+CPR YHL CLDP L R P G+W CP C ++ Q Sbjct: 339 DGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 429
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12 Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 2 Query: 335 SSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKC 502 ++ K+K D Y C +C GG+LLCCDSCP YH CL PPLK IP G W CP+C Sbjct: 26 NAKKQKFRDEEY--CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 2 Query: 374 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQKNDQ 520 EC +C GG L+CCD CPR +HL CL PPL+ IP+G W+C C Q Q Sbjct: 298 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 346
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12 Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2 Query: 374 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGRWQCPKCTQ 508 EC +C GG L+CCD CPR +HL CL PPL+ IP+G W+C C Q Sbjct: 300 ECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQ 344
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: PHF12_MOUSE (PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12 Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 2 Query: 239 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL--KRIPNGRWQCPKCT---QKNDQLKRI 532 S G E + +P T A++R + R S + +D C C GG+LLCCD CP +HLQC +PPL + +P G W C +CT +K +Q K + Sbjct: 17 SGGLMEQIQALLAPPKTDEAEKRSRKPEKESRRSGRATNHDS----CDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKEL 115
BLAST of EY728685 vs. ExPASy Swiss-Prot
Match: PHF12_HUMAN (PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 8.616e-12 Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 2 Query: 239 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL--KRIPNGRWQCPKCT---QKNDQLKRI 532 S G E + +P T A++R + R S + +D C C GG+LLCCD CP +HLQC +PPL + +P G W C +CT +K +Q K + Sbjct: 17 SGGLMEQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDS----CDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKEL 115 The following BLAST results are available for this feature:
BLAST of EY728685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY728685 ID=EY728685; Name=EY728685; organism=Citrus sinensis; type=EST; length=886bpback to top |