EY728680

Overview
NameEY728680
Unique NameEY728680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728680_ssr752 microsatellite EY728680_ssr752:752..763. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1489 contig Csv1_Contig1489:69..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728680 vs. ExPASy Swiss-Prot
Match: WOX8_ORYSJ (WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.160e-52
Identity = 105/171 (61.40%), Postives = 132/171 (77.19%), Query Frame = 1
Query:  247 DGGDTSNGL-CVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNE-IAGMRMGNPYFDPFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNXRARLKRKQSGVVPNNAESKAETVTHAESRKQNPESIQSLEDS 753
            D G    GL  VKVMTDEQME+LRKQI++YA ICEQLV+MH+  +AQ + IAGMR+GN Y DP +  G  K+TARQRWTPTP QLQILE+++D+  GTP KQKI+D+TAEL++HGQISETNVYNWFQN RAR KRKQ+ +  NNAES+AE    + + K+ P+S + L  +
Sbjct:   16 DRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKK-PKSDRPLHQN 185          
BLAST of EY728680 vs. ExPASy Swiss-Prot
Match: WOX13_ARATH (WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.238e-50
Identity = 103/188 (54.79%), Postives = 125/188 (66.49%), Query Frame = 1
Query:  202 PNFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNXRARLKRKQSG---VVPNNAESKAETVTHA--ESRKQNPESIQSLED 750
            PN      ++      G     G+ VKVMTDEQ E LRKQIA+Y  ICE+LV+MHK  +AQ ++AG RMG  Y DP ++S   K+TARQRWTPTP QLQILE ++D+  GTP KQKI+D+T EL++HGQI+E NVYNWFQN RAR KRKQ G      NN ES+ ET   A  E R   PES+  L D
Sbjct:   10 PNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLAGGRMGGLYADPMMSSLGHKMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGLPD 197          
BLAST of EY728680 vs. ExPASy Swiss-Prot
Match: WOX14_ARATH (WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana GN=WOX14 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.545e-39
Identity = 93/202 (46.04%), Postives = 125/202 (61.88%), Query Frame = 1
Query:  223 EMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIA-GMR-MGNPYFDPFVASGSQ-KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNXRARLKRKQSGVVPNNAESKAETVTHAESRKQNPESIQSLEDSPPPPXGRRYLSSXPDLGIDXMI 819
            EM+R+ Q      +     +VMT+EQME+LRKQIAVYA+IC+QLV +H   S+ + ++ G+R M   YFDP  AS S  +++ R RWTPT  QLQILE +YDE  GTP +++I+++  EL++HGQI+ETNVYNWFQN RAR KRKQ      N ++    VT  E R        S  DS         L   PDLGI+ ++
Sbjct:   16 EMDREIQ------NGAYSGRVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGGYFDPMGASSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQPQTTTANGQADDVAVTTEERR--------SCGDSGGLESYEHILFPSPDLGIEHLL 203          
BLAST of EY728680 vs. ExPASy Swiss-Prot
Match: WOX10_ARATH (Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana GN=WOX10 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.777e-35
Identity = 86/186 (46.24%), Postives = 115/186 (61.83%), Query Frame = 1
Query:  280 KVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIA-GMR-MGNPYFDPFVASGSQK-LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNXRARLKRKQ---SGVVPNNAESKAETVTHAESRKQNPESIQSLEDSPPPPXGRRYLSSXPDLGIDXMI 819
            +VMTDEQME LRKQIA+YA++C+QLV +H   S+   ++ GM  M   YFDP VAS S   ++ R RWTPT  QLQILE++Y E  GTP  ++I+++T EL++HGQI E NVY+WFQN RAR KRKQ   + +  + A+  A T T    R          +DS         L   PDLGI+ ++
Sbjct:   13 RVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPMVASSSAHGMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQPPTTTITSSQADDAAVTTTEERGR--------CGDDSGGFESYEHILFPSPDLGIEHLL 190          
BLAST of EY728680 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSJ (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica GN=WOX5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  436 ASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNXRARLKRKQ 651
            AS +    A  RWTPT  Q+ +LE +Y +   TP  ++IQ +TA L +HG I   NV+ WFQN +AR ++KQ
Sbjct:   33 ASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104          
BLAST of EY728680 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSI (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica GN=WOX5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.419e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  436 ASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNXRARLKRKQ 651
            AS +    A  RWTPT  Q+ +LE +Y +   TP  ++IQ +TA L +HG I   NV+ WFQN +AR ++KQ
Sbjct:   33 ASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104          
The following BLAST results are available for this feature:
BLAST of EY728680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
WOX8_ORYSJ5.160e-5261.40WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. ... [more]
WOX13_ARATH8.238e-5054.79WUSCHEL-related homeobox 13 OS=Arabidopsis thalian... [more]
WOX14_ARATH8.545e-3946.04WUSCHEL-related homeobox 14 OS=Arabidopsis thalian... [more]
WOX10_ARATH9.777e-3546.24Putative WUSCHEL-related homeobox 10 OS=Arabidopsi... [more]
WOX5_ORYSJ4.419e-1144.44WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
WOX5_ORYSI4.419e-1144.44WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-B07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728680 ID=EY728680; Name=EY728680; organism=Citrus sinensis; type=EST; length=905bp
CACGCGTCCGAATGGTTTCTATACCCTTGCACTCTAAAGTGACTTGTTTC
TTCTTCTCCAATCTATAAAATAAATTTATTTATATAAAAATGAAAGAAAT
GGTTTGAGTTTGGAAGTGGGTAGTGAAGGGTGGGAAAAAGAAAAAAGAGA
AAAAGCCAAAAAGAAAAAAAAAAGAAAATTCAATCAATGAAAATGGAGTG
GCCAAATTTTCAACAAGGAGGAGAAATGGAGAGGCAGTTTCAGCAAGATG
GAGGGGACACTAGTAATGGGTTGTGCGTGAAAGTGATGACTGATGAACAA
ATGGAGTTGCTCAGGAAACAGATCGCTGTTTATGCTATGATTTGTGAGCA
GCTTGTTCAGATGCACAAAGTCTTCTCTGCTCAAAATGAAATCGCTGGAA
TGAGAATGGGGAATCCATACTTTGATCCCTTTGTGGCATCTGGCAGCCAG
AAGCTCACTGCCAGGCAACGGTGGACCCCGACACCTGCACAGCTCCAAAT
CCTTGAGCATGTTTACGATGAATGCAAGGGGACTCCTCGCAAACAGAAGA
TCCAGGATATGACCGCTGAATTGGCAAAACATGGCCAAATTTCTGAAACA
AATGTGTATAACTGGTTTCAGAATANGAGAGCCCGTTTAAAGAGAAAGCA
ATCAGGTGTGGTTCCAAACAATGCAGAATCAAAAGCAGAGACAGTGACAC
ATGCTGAATCCAGGAAGCAAAACCCGGAAAGCATCCAGTCTTTGGAGGAT
TCACCACCACCACCCANGGGACGAAGATATCTATCCTCAANTCCTGATTT
AGGGATTGACCANATGATTGGGTAGATGGAAATTCCCGGAAGCTCAGTTT
TCACTGGGCAGTAAACCCATATGATTGCTTGGATGATGCCCTCCAGAGAG
CATAC
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