EY728659
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY728659 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 202.216 bits (513), Expect = 1.302e-54 Identity = 110/198 (55.56%), Postives = 134/198 (67.68%), Query Frame = 3 Query: 12 SSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVXYGGFGDYPMLNGNRVEHSHGNW 590 SSPDSS+LTREG++K N+DP A+G SRVLQGQE+STLR E S E D E SVVW S DD+K+DVVS SRRYGSENW+ RHEP YTDLLSGFG N DPSHG PF D ++P ++ + D EGKF+ +A W ++ SG SLK+ ES KVP D + Q R NV Y +YP+LNG E++ GNW Sbjct: 419 SSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTENAGGNW 609 HSP 2 Score: 33.113 bits (74), Expect = 1.302e-54 Identity = 18/53 (33.96%), Postives = 27/53 (50.94%), Query Frame = 2 Query: 614 NFENSAHSRELMPKSAMVQDQEAGKSKD--CKLVGIPLFGNMVYAQPXVSHKN 766 N + A +RE + K +E KS++ C+L GIPL NM +S +N Sbjct: 624 NAQAQAQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRN 676
BLAST of EY728659 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16 Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 3 Query: 12 SSPDSSVLTREGSSKLNVDPSSA--TGFSRVLQGQEFSTLRGNFAERESNESD-TAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVR----KSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVXYGGFGDYPMLNGNRVEHSHGNW 590 +SP+S +LT+E ++K++ DP+ A + S VLQGQE TLR N E SN+SD TA K ++W PS + K ++ +R +NW+ GR E + D+ SG + D S GF D P R K+ +G + P+ + PSL + ES+ ++ ++++ + YG D P R E + +W Sbjct: 382 ASPESPILTKEAATKVDTDPAQAQRSQNSTVLQGQEQMTLRSNLTE--SNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMDNWMQLGRRETDFKDVRSGSQSFGD-SPGFFMQNFDEAPNRLTSFKNQFQDQGSARHFSDPYYYVSPQPSLTV-ESSTQMHTDSKELHFWNGQSTVYGNSRDRP--QNFRFEQNSSSW 575
BLAST of EY728659 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11 Identity = 59/200 (29.50%), Postives = 88/200 (44.00%), Query Frame = 3 Query: 21 DSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVXYGGFGDYPMLNGNRVEHSHGNW 590 DSS + +E ++K+ V+ S G R Q QE +T + F S+E ++A+KS++ P D EK + + GS+ W+ + E Y+++LSGF D GF S V DQ+ N+ WS MP L + + N + +Q V Q GN +G G Y L G E G W Sbjct: 407 DSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGWMQMSKPES-YSEMLSGFQPPKDVQTPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGW 599
BLAST of EY728659 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11 Identity = 57/203 (28.08%), Postives = 89/203 (43.84%), Query Frame = 3 Query: 12 SSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKS---------VLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRG-NVXYGGFGDYPMLNGNRVEHSHGNW 590 SSPD S + +E +SK+ + S G R QE LR F + SNE +T++K +W + EK + VS R GS++W+ R + +++LSGF D + SS F + +S DQ N+ WSLMP + + N + D+ R N +GG G + L + ++ W Sbjct: 403 SSPDLSAVNKEVASKVMAN-SQQNGLPRAFHSQENMNLRSRFGD--SNELNTSQKLTMWSSGSNQEK-NNVSVQRELGSQSWMQMRRPDG-SSEILSGFQPLKDTRNPLSS-FPSQISGNRSNTWNTINVHYPDQNANHNMYPGTWSLMPPNTGFGVNQQNY---LMTPDITLPQRSLNAKFGGNGAFTSLRAHGIDQRSSGW 596 The following BLAST results are available for this feature:
BLAST of EY728659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY728659 ID=EY728659; Name=EY728659; organism=Citrus sinensis; type=EST; length=870bpback to top |