EY728659

Overview
NameEY728659
Unique NameEY728659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728659 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.302e-54
Identity = 110/198 (55.56%), Postives = 134/198 (67.68%), Query Frame = 3
Query:   12 SSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVXYGGFGDYPMLNGNRVEHSHGNW 590
            SSPDSS+LTREG++K N+DP  A+G SRVLQGQE+STLR    E  S E D  E SVVW  S DD+K+DVVS SRRYGSENW+   RHEP YTDLLSGFG N DPSHG   PF D     ++P ++ + D EGKF+ +A  W ++ SG SLK+ ES  KVP    D + Q R NV Y    +YP+LNG   E++ GNW
Sbjct:  419 SSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTENAGGNW 609          

HSP 2 Score: 33.113 bits (74), Expect = 1.302e-54
Identity = 18/53 (33.96%), Postives = 27/53 (50.94%), Query Frame = 2
Query:  614 NFENSAHSRELMPKSAMVQDQEAGKSKD--CKLVGIPLFGNMVYAQPXVSHKN 766
            N +  A +RE + K      +E  KS++  C+L GIPL  NM      +S +N
Sbjct:  624 NAQAQAQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRN 676          
BLAST of EY728659 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   12 SSPDSSVLTREGSSKLNVDPSSA--TGFSRVLQGQEFSTLRGNFAERESNESD-TAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVR----KSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVXYGGFGDYPMLNGNRVEHSHGNW 590
            +SP+S +LT+E ++K++ DP+ A  +  S VLQGQE  TLR N  E  SN+SD TA K ++W PS +  K   ++  +R   +NW+  GR E  + D+ SG  +  D S GF     D  P R    K+    +G     + P+  +   PSL + ES+ ++     ++++    +  YG   D P     R E +  +W
Sbjct:  382 ASPESPILTKEAATKVDTDPAQAQRSQNSTVLQGQEQMTLRSNLTE--SNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMDNWMQLGRRETDFKDVRSGSQSFGD-SPGFFMQNFDEAPNRLTSFKNQFQDQGSARHFSDPYYYVSPQPSLTV-ESSTQMHTDSKELHFWNGQSTVYGNSRDRP--QNFRFEQNSSSW 575          
BLAST of EY728659 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 59/200 (29.50%), Postives = 88/200 (44.00%), Query Frame = 3
Query:   21 DSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVXYGGFGDYPMLNGNRVEHSHGNW 590
            DSS + +E ++K+ V+ S   G  R  Q QE +T +  F    S+E ++A+KS++ P   D EK +      + GS+ W+   + E  Y+++LSGF    D     GF S               V     DQ+   N+    WS MP    L + + N  + +Q   V  Q  GN  +G  G Y  L G   E   G W
Sbjct:  407 DSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGWMQMSKPES-YSEMLSGFQPPKDVQTPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGW 599          
BLAST of EY728659 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 57/203 (28.08%), Postives = 89/203 (43.84%), Query Frame = 3
Query:   12 SSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKS---------VLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRG-NVXYGGFGDYPMLNGNRVEHSHGNW 590
            SSPD S + +E +SK+  + S   G  R    QE   LR  F +  SNE +T++K  +W    + EK + VS  R  GS++W+   R +   +++LSGF    D  +  SS F   +   +S           DQ    N+    WSLMP      + + N    +   D+    R  N  +GG G +  L  + ++     W
Sbjct:  403 SSPDLSAVNKEVASKVMAN-SQQNGLPRAFHSQENMNLRSRFGD--SNELNTSQKLTMWSSGSNQEK-NNVSVQRELGSQSWMQMRRPDG-SSEILSGFQPLKDTRNPLSS-FPSQISGNRSNTWNTINVHYPDQNANHNMYPGTWSLMPPNTGFGVNQQNY---LMTPDITLPQRSLNAKFGGNGAFTSLRAHGIDQRSSGW 596          
The following BLAST results are available for this feature:
BLAST of EY728659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARFB_ARATH1.302e-5455.56Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ9.505e-1632.00Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFW_ORYSI3.164e-1129.50Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFX_ORYSJ4.133e-1128.08Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-G12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728659 ID=EY728659; Name=EY728659; organism=Citrus sinensis; type=EST; length=870bp
CACGCGTCCGCTCATCACCTGACTCGTCTGTTCTCACTAGGGAAGGTTCA
TCTAAACTAAATGTAGACCCTTCATCAGCTACTGGATTTTCAAGGGTCTT
GCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAGAGAGAAA
GTAACGAGTCTGACACTGCTGAAAAGTCTGTTGTGTGGCCACCTTCACTT
GATGATGAGAAGATTGATGTGGTGTCTGCTTCAAGAAGATATGGATCAGA
GAACTGGGTGCCACCAGGGAGGCATGAACCAGTGTACACTGATTTGCTGT
CAGGATTTGGAGCAAATGCTGATCCCTCCCATGGGTTTAGTTCACCTTTT
GCTGATGCAGTTCCAGTAAGAAAAAGTGTACTGGATCAAGAGGGGAAGTT
TAATTTGGTTGCTCGACCATGGTCCTTGATGCCCTCTGGTCCATCACTTA
AAATGCCAGAGTCTAATGCAAAAGTTCCGGTACAAGGTGGTGATGTAAAT
TATCAAGTGCGTGGTAATGTTANATATGGCGGGTTTGGTGACTATCCCAT
GCTTAACGGCAATAGAGTTGAGCACTCACATGGAAACTGGTTAGTGCCCC
CCCTTCCCCTTCTAATTTTGAAAATTCAGCTCATTCGAGAGAGTTGATGC
CCAAATCAGCAATGGTGCAAGACCAAGAGGCTGGAAAATCTAAGGACTGC
AAGCTTGTTGGCATTCCCCTCTTCGGTAACATGGTTTATGCACAGCCCNT
AGTATCCCATAAAAACACATGAATGACCCCGCTGGGAACCTAGATCACCA
AATTCGTGCTTTGGATCACATCAAAGTCCGACCATCCAAAAGCCCCCATT
GGGCGATGGAGATCGGGGTT
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