EY728641

Overview
NameEY728641
Unique NameEY728641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.903e-94
Identity = 164/217 (75.58%), Postives = 185/217 (85.25%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFR-LGDLMRIEYPEKSTSHRR 709
            +NVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLIML LATHEVHFSILREVV+TPGQQ++CFLCGQ GH A+NCEGK K++AGE DEKGD     KKPYQFLHIW LREYL+ E RIPNPPFEIDLE IVDDFIF+CFFVGNDFLPHMPTLEIREGAINLLMAVYKKE  +  GYLTDG KP+L+RVE   + +G      + +++  H+R
Sbjct:  198 ANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKKPYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQR 414          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.014e-79
Identity = 140/195 (71.79%), Postives = 160/195 (82.05%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEH 646
            SNVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLIML+LATHEVHFSILREV+  PGQQ+KCF+CGQ GH A++C GK+       D     + + KK YQFL+IW LREYL YE  IP+PPF I+ E I+DDF+F+CFFVGNDFLPHMPTLEIREGAINLLM VY+KE  A+GGYLTD  +  L RVEH
Sbjct:  199 SNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAAD-----IPIHKKKYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEH 388          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.874e-74
Identity = 131/198 (66.16%), Postives = 160/198 (80.81%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFR 655
            +NVPGEGEHKIMSY+R  +N PGY+PNT HCLYGLDADLIML+LATHE+HFSILREVVF PG++ KCFLCGQ GH AA+CEGK KRK GE  +  +  VV KKPY+F++IW LREYL+++ +IP    + +L+ ++DDFIF+CFFVGNDFLPHMPTLEIREGAI LLM+VYK +  +   YLTD SK +LR VE   +
Sbjct:  200 ANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIMLSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVVKKPYEFVNIWILREYLEHDMQIPGA--KKNLDRLIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIK 395          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_CHAGB (5'-3' exoribonuclease 2 OS=Chaetomium globosum GN=RAT1 PE=3 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 1.626e-61
Identity = 116/197 (58.88%), Postives = 138/197 (70.05%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHV 649
            + VPGEGEHKIM +VR QRN P +DPNTRH +YGLDADLIML LATHE HF +LRE V F  G+   C LCGQ GH   NC G+AK KAGEFDEK  +   P KP+ +LH+  LREYL  E  IPN PF  DLE  +DD++FMCFFVGNDFLPH+P LEIRE  I  LMA++K     +GGY+T      L R +++
Sbjct:  205 ATVPGEGEHKIMEFVRSQRNSPEHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQQGKARMCKLCGQKGHDERNCRGEAKEKAGEFDEK--DKAEPLKPFIWLHVSILREYLAIELNIPNLPFRWDLERAIDDWVFMCFFVGNDFLPHLPALEIRENGIETLMAIWKDNLPVMGGYVTKDGHVDLDRAQYI 399          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_NEUCR (5'-3' exoribonuclease 2 OS=Neurospora crassa GN=rat-1 PE=3 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 2.124e-61
Identity = 113/197 (57.36%), Postives = 141/197 (71.57%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHV 649
            + VPGEGEHKIM +VR QR  P +DPNTRH +YGLDADLIML LATHE HF +LRE VF    + + C +CGQ GH A NC+G+AK K GEFDEK  + VVP KP+ +LH+  LREYL  E  +P  PF+ +LE  +DD++FMCFFVGNDFLPH+P LEIRE  I+ L A++K     +GGYLT      L RV+++
Sbjct:  204 ATVPGEGEHKIMEFVRSQRGSPNHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFAQDSRPRLCKICGQKGHDAMNCKGEAKEKNGEFDEK--DAVVPLKPFIWLHVSILREYLAIELDVPGLPFQFNLERAIDDWVFMCFFVGNDFLPHLPALEIRENGIDTLTAIWKDNLPVMGGYLTKDGHADLERVQYI 398          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_USTMA (5'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1 PE=3 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 8.924e-60
Identity = 111/195 (56.92%), Postives = 145/195 (74.36%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVE 643
            ++VPGEGEHKIM ++R QR+ P +DPNT+H +YGLDADLIML+LATHE +F +LRE VF    + K C LCGQPGH AA+C G AK+K+G+ DE        KKP+ FL + TLREYL+ E  IP  PF  DLE  +DD++F+ FFVGNDFLPH+P+LEIR+GAI+ L+ ++KKE  A+GGYLT+  +  L R +
Sbjct:  205 ASVPGEGEHKIMEHIRRQRSHPEHDPNTKHVIYGLDADLIMLSLATHEPYFKVLREDVFAADNKPKTCNLCGQPGHFAASCTGAAKKKSGQHDEIAP-TPPEKKPFIFLDVATLREYLEVELNIPQLPFAFDLERAIDDWVFLIFFVGNDFLPHLPSLEIRDGAIDTLLRIWKKELPAMGGYLTNHGRVELGRAQ 398          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_EMENI (5'-3' exoribonuclease 2 OS=Emericella nidulans GN=rat1 PE=3 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 4.429e-59
Identity = 108/199 (54.27%), Postives = 140/199 (70.35%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFR 655
            + VPGEGEHKIM ++R QR  P +DPN RH +YGLDADLIML LATHE HF +LRE V F   +Q  C LCGQPGH A  C G+AK K GEFDEKG    +  KP+ +LH+  LREYL  E  +P+ PF  DLE  +DD++FMCFFVGNDFLPH+P+L+IRE  I+ L+A+++     +GGYLT   +  L++ + + +
Sbjct:  202 ATVPGEGEHKIMEFIRSQRASPEHDPNARHVIYGLDADLIMLGLATHEPHFRVLREDVFFQESKQRTCHLCGQPGHKAEECRGQAKEKNGEFDEKGKGATL--KPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLDIREDGIDTLIAIWRDNIPLMGGYLTQDGRVDLKKAQLILQ 398          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_ASPFU (5'-3' exoribonuclease 2 OS=Aspergillus fumigatus GN=rat1 PE=3 SV=4)

HSP 1 Score: 222.246 bits (565), Expect = 3.174e-57
Identity = 107/199 (53.77%), Postives = 138/199 (69.35%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFR 655
            + VPGEGEHKIM ++R QR  P +DPNTRH +YGLDADLIML LATHE HF +LRE V F   +   C LCGQ GH A  C G+AK K GEFDEK     +  KP+ +LH+  LREYL  E  +P+ PF  DLE  +DD++FMCFFVGNDFLPH+P+L+IRE  I+ L+A+++     +GGYLT+     L+R + + +
Sbjct:  203 ATVPGEGEHKIMEFIRSQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQESRARTCHLCGQQGHKAEECRGQAKEKNGEFDEKQKGSSL--KPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHVDLKRAQLILQ 399          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_GIBZE (5'-3' exoribonuclease 2 OS=Gibberella zeae GN=RAT1 PE=3 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.575e-56
Identity = 110/195 (56.41%), Postives = 134/195 (68.72%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVE 643
            + VPGEGEHKIM++VR QR  P +DPNTRH +YGLDADLIML LATHE HF +LRE VF   Q+ + C +CGQ GH A NC G+ K+K GE DEK   V +  KP+ +LH+  LREYL  E  +PN PF  DLE  VDD+IFMC FVGNDFLPH+P LEIRE  I+ L  ++K     +GGY+T      L R +
Sbjct:  204 ATVPGEGEHKIMNFVRSQRASPDHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQDQKARLCKICGQKGHDAQNCRGEEKKKDGEHDEKDKGVAL--KPFIWLHVAVLREYLAVELGVPNLPFRFDLERAVDDWIFMCCFVGNDFLPHLPALEIREHGIDTLTKIWKDNLPVMGGYVTKDGHIDLERAQ 396          
BLAST of EY728641 vs. ExPASy Swiss-Prot
Match: XRN2_ASPOR (5'-3' exoribonuclease 2 OS=Aspergillus oryzae GN=rat1 PE=3 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 2.687e-56
Identity = 105/199 (52.76%), Postives = 137/199 (68.84%), Query Frame = 2
Query:   62 SNVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKECXALGGYLTDGSKPSLRRVEHVFR 655
            + VPGEGEHKIM +VR QR  P +DPNTRH +YGLDADLIML LATHE HF +LRE V F   +   C LCGQ GH A  C G+AK K G+FDEKG    +  KP+ +L++  LREYL  E  +P+ PF  DLE  +DD++FMCFFVGNDFLPH+P+L+IRE  I+ L+A+++     +GGYLT       ++ + + +
Sbjct:  201 ATVPGEGEHKIMEFVRSQRAAPEHDPNTRHVIYGLDADLIMLGLATHEPHFRVLREDVFFQESKARTCHLCGQAGHKAEECRGQAKEKNGQFDEKGKGTSL--KPFIWLNVSILREYLAVELYVPHQPFPFDLERALDDWVFMCFFVGNDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTKDGHVEFKKAQLILQ 397          
The following BLAST results are available for this feature:
BLAST of EY728641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
XRN3_ARATH1.903e-9475.585'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN... [more]
XRN4_ARATH1.014e-7971.795'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
XRN2_ARATH4.874e-7466.165'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN... [more]
XRN2_CHAGB1.626e-6158.885'-3' exoribonuclease 2 OS=Chaetomium globosum GN=... [more]
XRN2_NEUCR2.124e-6157.365'-3' exoribonuclease 2 OS=Neurospora crassa GN=ra... [more]
XRN2_USTMA8.924e-6056.925'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1... [more]
XRN2_EMENI4.429e-5954.275'-3' exoribonuclease 2 OS=Emericella nidulans GN=... [more]
XRN2_ASPFU3.174e-5753.775'-3' exoribonuclease 2 OS=Aspergillus fumigatus G... [more]
XRN2_GIBZE1.575e-5656.415'-3' exoribonuclease 2 OS=Gibberella zeae GN=RAT1... [more]
XRN2_ASPOR2.687e-5652.765'-3' exoribonuclease 2 OS=Aspergillus oryzae GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-E11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728641 ID=EY728641; Name=EY728641; organism=Citrus sinensis; type=EST; length=913bp
CACGCGTCCGCACTGAAAGAATTATCCAAGCTTTAAGGGGTATAACCGTC
CCACCGTCCTCTCAAATGTTCCTGGTGAAGGGGAACACAAGATTATGTCA
TACGTTCGCCTTCAAAGAAATCTTCCTGGTTATGATCCAAATACTCGCCA
TTGCTTGTATGGTTTGGATGCGGATCTGATTATGTTGGCTTTGGCAACGC
ATGAAGTTCATTTTTCAATCCTTCGAGAGGTTGTATTTACTCCTGGACAG
CAAGACAAATGCTTTCTTTGTGGTCAGCCTGGTCATCTGGCTGCCAATTG
TGAAGGAAAGGCGAAGAGAAAGGCAGGAGAATTTGATGAAAAAGGGGATG
AGGTCGTTGTGCCTAAAAAGCCCTATCAGTTTCTCCACATATGGACCCTT
AGAGAATATCTGGACTACGAGTTCAGAATTCCTAATCCTCCATTTGAGAT
CGACTTAGAATGCATTGTGGATGATTTTATCTTTATGTGTTTCTTTGTTG
GCAATGACTTTTTGCCGCATATGCCAACATTGGAGATTCGTGAGGGTGCA
ATCAACTTGTTGATGGCAGTTTACAAGAAGGAATGTANGGCTTTGGGCGG
GTACTTGACTGATGGAAGCAAGCCAAGTCTGCGCCGGGTGGAGCATGTAT
TCAGGCTGGGGGATCTTATGAGGATAGAATATCCAGAGAAGAGCACGAGT
CATCGGAGACTGCTGAAACATCCAGCGTGAAACGCCCAGCGAAAAGAGGA
GATATGTGGAGCGCTACCCAACCGGATTCCTTAGGCTGGTCCCCGAGTCG
TGGTTCTCGGCTGGTTGAGCCCTGCGCCTTCACCTATCACGGAGTGCTGT
GTGGGGGGTGAGAAAGGGTGAGGAGTTCCTGGCGGCCCAAAATGCCCAGT
CGTTGCTGGGGCT
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