EY728635

Overview
NameEY728635
Unique NameEY728635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.137e-23
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  284 SFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSRMYFVSE 535
            SF GT QKC VCEKTVY V++L A+  VYHK+CF+C HC  TLKLSN++S +GV+YC+ HF+QLFK +G+  K+F     F  E
Sbjct:    3 SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKFKPE 86          

HSP 2 Score: 88.1965 bits (217), Expect = 6.659e-17
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  287 FIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNK 502
            F GT+ KC  C K VYP+E++  DG  YH++CFKC H   T+  SNY + EG LYCK H  QLFK+ GN+++
Sbjct:  103 FEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQ 174          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:  284 SFIGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSRMY 523
            +F+  ++ C +C+KTVYP+E L AD   +HKSCF+C HC   L L NY+S+ G +YCKPHF+QLFK  GN+++ F  + +
Sbjct: 3249 AFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGFGHKQH 3328          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  299 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSRMY 523
            ++ C  C+KTVYP+E+L AD +++H SCF C HC   L L +Y++M G  YCKPHF+QLFK  GN+++ F  + +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGFGRKQH 112          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-18
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  299 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSRMY 523
            ++ C  C+KTVYP+E+L AD +++H SCF C HC   L L +Y++M G  YC+PHF+QLFK  GN+++ F  + +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGFGRKQH 112          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-18
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  299 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSRMY 523
            ++ C  C+KTVYP+E+L AD +++H SCF C HC   L L +Y+++ G  YCKPHF+QLFK  GN+++ F  + +
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQH 111          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-18
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  299 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSRMY 523
            ++ C  C+KTVYP+E+L AD +++H SCF C HC   L L +Y+++ G  YCKPHF+QLFK  GN+++ F  + +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQH 112          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.866e-18
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  299 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSRMY 523
            ++ C  C+KTVYP+E+L A+  V+H SCF+CS+C   L L  Y+S+ G +YCKPHF QLFK  GN+++ F  + +
Sbjct:  385 KESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHKQH 459          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.866e-18
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:  299 QQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGNFNKNFQSR 517
            ++ C  C+KTVYP+E+L A+  V+H SCF+CS+C   L L  Y+S+ G +YCKPHF QLFK  GN+++ F  R
Sbjct:  387 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHR 459          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: MICA3_HUMAN (Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query:  290 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYS--SMEGVLYCKPHF 466
            +G    C  C+K VY +E+LSA+G  +H+SCFKC +C  TL+LS Y+    +G  YCKPH+
Sbjct:  786 LGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGKFYCKPHY 846          
BLAST of EY728635 vs. ExPASy Swiss-Prot
Match: MICA2_MOUSE (Protein MICAL-2 OS=Mus musculus GN=Mical2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query:  290 IGTQQKCKVCEKTVYPVEQLSADGIVYHKSCFKCSHCKGTLKLSNYS--SMEGVLYCKPHF 466
            +G +  C  C+K VY +E+LSA+G  +H+ CF+CS C  TL+L+ Y+    EG  YCKPHF
Sbjct:  747 LGGRDTCYFCKKRVYMIERLSAEGHFFHQECFRCSVCSATLRLAAYAFDCDEGKFYCKPHF 807          
The following BLAST results are available for this feature:
BLAST of EY728635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SF3_HELAN2.137e-2357.14Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
XIRP2_MOUSE4.927e-2048.75Xin actin-binding repeat-containing protein 2 OS=M... [more]
LIMD2_RAT5.447e-1948.00LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_MOUSE1.213e-1846.67LIM domain-containing protein 2 OS=Mus musculus GN... [more]
LIMD2_HUMAN1.213e-1846.67LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
LIMD2_BOVIN1.213e-1846.67LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
LIMA1_MOUSE7.866e-1848.00LIM domain and actin-binding protein 1 OS=Mus musc... [more]
LIMA1_HUMAN7.866e-1850.68LIM domain and actin-binding protein 1 OS=Homo sap... [more]
MICA3_HUMAN7.131e-1147.54Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=... [more]
MICA2_MOUSE9.313e-1147.54Protein MICAL-2 OS=Mus musculus GN=Mical2 PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-E04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728635 ID=EY728635; Name=EY728635; organism=Citrus sinensis; type=EST; length=875bp
CACGCGTCCGCGGACGCGTGGGCTGTCACATTCTCTCTCTTCTTCATCAT
CACCATCCTCTCTCGCCTGCTTAGAAAAAGCTCCTCCAATCCCACGCGCC
AATGTTCATTTCCCCAACCATCGCTTTCTCTTTCTCTTTCTCCTCTCTTT
AAAACATCTCTCTAATATATATAGTCTCTCTAACTCAACTCCCCACTTGG
GTTTTGTCCTTTTCCTTAAAATCTCAGCTCAATCAACTTAAAGATCCATT
TTTTTTTTCCTTTCCAAAGATCTAAAAGCAATGTCTTTTATTGGTACCCA
ACAGAAATGCAAGGTCTGTGAGAAGACAGTTTATCCAGTTGAGCAATTAT
CTGCTGATGGGATTGTTTATCACAAGTCTTGCTTCAAGTGCTCTCACTGC
AAAGGCACACTCAAGCTGAGCAATTACTCATCCATGGAAGGTGTTCTTTA
CTGTAAGCCTCACTTTGAGCAGCTTTTCAAGGAGTCGGGTAACTTCAACA
AGAATTTCCAGTCACGTATGTATTTCGTCTCTGAAATGAAGAAGCTCTTT
GTTTGAATTTTCGATAGTTTTATGTTGCCTGTTTGATCAGCTATCAATTT
CATTGTTGACAGCTGCAAAGTCAGCTGAGAAGTTAACTCCTGAGCTGGTA
AATCTTTCCTACAATATTGCATGCATTTCAAATTAAACTACAACCATTCA
ACGATATGCTTAGTACGGTATATGTTGTAGGGTGTTCATGCTGATTCCTA
ATAGCTTGTGCTTGTTGCAGACAAGGGCGCCCTACAAAGCTGCCGCATGG
TCTCTGGGACCCAAGAAAAATGTGTTCTGGCAGAAAAAAGTGGTATCGTT
GGAGAAGGTTGGATCCACTTCCAAA
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