EY728469

Overview
NameEY728469
Unique NameEY728469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728469 vs. ExPASy Swiss-Prot
Match: P2C39_ORYSJ (Probable protein phosphatase 2C 39 OS=Oryza sativa subsp. japonica GN=Os04g0403701 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 2.956e-13
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:  633 KNSSFSCLSGAALSANATLAYTNICNGLIXAEILPXLDSPNHF 761
            +N SF+CLSGAA+SAN TLA TNIC GLI  EILP LDSPN F
Sbjct:   69 QNGSFTCLSGAAISANFTLANTNICKGLIGEEILPELDSPNSF 111

HSP 2 Score: 29.6462 bits (65), Expect = 2.956e-13
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = 1 
Query:  505 QQQRMMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVP 618
            ++  ++ S   L VSFGY CN ++  S +  D Y+I P
Sbjct:   20 EEDMLVRSYSNLNVSFGYHCNSYQCFSLDT-DEYDISP 56
[Close]
BLAST of EY728469 vs. ExPASy Swiss-Prot
Match: P2C40_ARATH (Probable protein phosphatase 2C 40 OS=Arabidopsis thaliana GN=At3g16560 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.147e-11
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 3 
Query:  627 IXKNSSFSCLSGAALSANATLAYTNICNGLIXAEILPXLDSPNHF 761
            + K SSFSCLSGAALS N TLA TNICNG+I +EILP LDSP  F
Sbjct:   43 LQKTSSFSCLSGAALSGNPTLANTNICNGVIGSEILPSLDSPKSF 87

HSP 2 Score: 22.7126 bits (47), Expect = 1.147e-11
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 2 
Query:  734 PXFGLPQSFRRVPRLXSI-KVDMLS 805
            P    P+SFR+VP   ++ K+D+LS
Sbjct:   79 PSLDSPKSFRKVPSSPALSKLDILS 103
The following BLAST results are available for this feature:
BLAST of EY728469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
P2C39_ORYSJ2.956e-1374.42Probable protein phosphatase 2C 39 OS=Oryza sativa... [more]
P2C40_ARATH1.147e-1173.33Probable protein phosphatase 2C 40 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-B10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728469 ID=EY728469; Name=EY728469; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGAAAAAAGAAGAAATAAAACATCCTCTCTAAATTTAGCAA
AGGACCCTTCACAACCATCCATTCATCTCTCCCTTTAAATCATTCCCTTT
AACGTACAACTTCTTTGATTTAGATTCTCCACTCAATCTTTTGCTTCTTC
TTTGCTTTTCATTCCGTGTTTGCCCATCACTGCTTTTTTTGTTGTGTTTT
TGCTTTGCTCAAAGTCGTCTCACCTTCACTCCTCACTTGCACGTTTATAT
GCTCGCATTTTTGTGGGTTTCTTGTCTTTGTTTGATCCGAGCTTCTGAGT
GGTCTTGTTCTGGATTTAAAGCATTAAAAGAATATGGTTGGATGATGAAT
GTTCAATTGTGGAGCTAAGAATTCGATTGATGATCTTCATTTGTCTATCC
TATTTGGGAACTTGACTCTAAATGGATTCTCTTGGTGTTCTATAGACGTG
CTTTGAGAAAACAACTGAGGAGCTACGAATAGTAGTCTCTAAGTCCCTCT
GATGCAACAACAACGTATGATGAATTCTGAAGGAGAGCTTAAGGTAAGTT
TTGGCTATCAATGTAATGGCCACAGAGATGGTTCTTGTGAGGTGCCAGAC
GGATATAACATTGTGCCTGGAATTANATCCANAAGAACAGTAGTTTCTCT
TGCCTGTCTGGTGCTGCCTTAAGTGCCAATGCGACATTGGCNTACACAAA
TATCTGCAATGGTTTGATANGGGCAGAAATACTCCCTANTTTGGACTCCC
CCAATCATTTCGTAGGGTACCTCGTCTCNACTCTATCAAGGTGGACATGC
TATCATCTCCCTCCAAGCAGTTGTCAATCTGAGTGGANTCATCTCTCCAG
TGATCTACCGAATATGATATGTGTTCAACTCTGATGCTCTTGCAAATGAA
GTATCTATGTTGGAGTG
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