EY728412

Overview
NameEY728412
Unique NameEY728412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728412 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.862e-54
Identity = 97/172 (56.40%), Postives = 132/172 (76.74%), Query Frame = 1
Query:   94 FEQSYRCYPASFI--EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAIGIVETDGEVDLA 603
            +EQ ++ +P SF+  EK  +ESG KI++PPSAL+ L+ L+I YPMLFE+ N  + + SHCGVLEFIAEEG+ Y+P WMM+NL L+EG+ + +KN TL KGT+VK+QP T +F+DISNPKA+LE +LR ++ LT  D IM+ YNN KYY+ ++E KP+NAI I+E D  VD A
Sbjct:   25 YEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFA 196          
BLAST of EY728412 vs. ExPASy Swiss-Prot
Match: UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.334e-52
Identity = 99/197 (50.25%), Postives = 134/197 (68.02%), Query Frame = 1
Query:   34 FEYSFTVKMFFDGYGYHGTSFEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAIGIVETDGEVDLARRAG 615
            F +S    MF +G  +H      +Y+C+  S +   E+  +E G KIIMPPSALD L  L+++YPMLF+L N    R SH GVLEF+A+EG  Y+P+WMMENLLL EGDI+ +++V+LP  T+ K QPH+ DFLDI+NPKA+LE  LRN++CLT GD I + YN K Y + ++ETKP NA+ I+E D  V+     G
Sbjct:    2 FHFSGFNMMFPEGRNFHA-----NYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVG 193          
BLAST of EY728412 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.621e-52
Identity = 94/172 (54.65%), Postives = 127/172 (73.84%), Query Frame = 1
Query:   94 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAIGIVETDGEVD 597
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++CLTTGD I + YN K Y + ++ETKP  A+ I+E D  VD
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVD 190          
BLAST of EY728412 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 6.621e-52
Identity = 94/172 (54.65%), Postives = 127/172 (73.84%), Query Frame = 1
Query:   94 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAIGIVETDGEVD 597
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++CLTTGD I + YN K Y + ++ETKP  A+ I+E D  VD
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVD 190          
BLAST of EY728412 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.129e-51
Identity = 93/172 (54.07%), Postives = 127/172 (73.84%), Query Frame = 1
Query:   94 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAIGIVETDGEVD 597
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++C+TTGD I + YN K Y + ++ETKP  A+ I+E D  VD
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVD 190          
BLAST of EY728412 vs. ExPASy Swiss-Prot
Match: UFD1_SCHPO (Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe GN=ufd1 PE=2 SV=4)

HSP 1 Score: 182.956 bits (463), Expect = 1.580e-45
Identity = 86/174 (49.43%), Postives = 124/174 (71.26%), Query Frame = 1
Query:   94 FEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNA---IGIVETDGEVD 597
            F+  YRCYP + I   E+P +  G K+I+PPSAL++L+ L++ YPMLF+  N AAE+ +H GVLEFIAEEG +Y+PYWMM  L L+ GD+VRV N  + +G+YVKLQP + +FLDI++ +A+LE  LRN+S LT  D   + YN++ Y I +I+ +P ++   + +VETD  VD
Sbjct:   32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVD 205          
BLAST of EY728412 vs. ExPASy Swiss-Prot
Match: UFD1_YEAST (Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae GN=UFD1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.931e-43
Identity = 89/182 (48.90%), Postives = 121/182 (66.48%), Query Frame = 1
Query:   91 SFEQSYRCYPASF----IEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP---SNAIGIVETDGEVDLARRAG 615
            +FE+ +RCYP +     I K     G KI +PPSAL +L+ L+I YPMLF+L  N   RV+H GVLEFIAEEG +Y+P WMME L +Q G ++++ +  +P G +VKL+P + DFLDIS+PKA+LE  LRN+S LT  D I ++YN K + I I+E KP   S +I ++ETD   D A   G
Sbjct:   20 TFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVG 201          
BLAST of EY728412 vs. ExPASy Swiss-Prot
Match: UFD1_CAEEL (Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.026e-36
Identity = 74/175 (42.29%), Postives = 113/175 (64.57%), Query Frame = 1
Query:   91 SFEQSYRCYPASFIEKP------QIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAIGIVETDGEVD 597
            +++Q++  Y   F+         +I  G KI++P SAL+ L   +I  PMLF+L N A +RV+HCGVLEF A EG   +P WMM+ L L +GD +R+++ TLPK T+ KL+P + +FL+I+NPKA+LE  LR Y+CLT  D I  +Y  +     +++ KP+N++ I+E D  +D
Sbjct:   20 NYDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLD 194          
The following BLAST results are available for this feature:
BLAST of EY728412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UFD1_DICDI1.862e-5456.40Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_DROME1.334e-5250.25Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_RAT6.621e-5254.65Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN6.621e-5254.65Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_MOUSE1.129e-5154.07Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_SCHPO1.580e-4549.43Ubiquitin fusion degradation protein 1 OS=Schizosa... [more]
UFD1_YEAST1.931e-4348.90Ubiquitin fusion degradation protein 1 OS=Saccharo... [more]
UFD1_CAEEL1.026e-3642.29Ubiquitin fusion degradation protein 1 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-D05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728412 ID=EY728412; Name=EY728412; organism=Citrus sinensis; type=EST; length=757bp
CCACGCGTCCGGCTGAAAGGTTGACTATCTTGGTTTGAATACTCATTCAC
AGTAAAAATGTTTTTTGATGGATATGGATATCATGGGACATCATTTGAGC
AGAGTTACCGATGTTACCCTGCATCATTTATTGAAAAGCCACAAATAGAA
AGTGGTGACAAAATTATAATGCCTCCTTCAGCCCTTGATCGCCTTGCATC
TTTGCATATTGATTATCCAATGTTGTTTGAGCTACGTAATAATGCGGCTG
AGCGGGTTTCCCACTGTGGAGTTCTTGAGTTTATTGCAGAGGAAGGCATG
ATCTATATGCCATACTGGATGATGGAGAACCTGCTTTTACAAGAGGGAGA
TATTGTGCGAGTGAAAAATGTGACACTTCCAAAGGGAACATATGTCAAAC
TTCAACCTCACACAAAGGACTTTCTCGATATTTCTAATCCCAAAGCCATC
TTGGAGACGACGTTAAGGAATTATTCCTGCTTGACCACTGGGGACAGTAT
TATGGTGGCATATAACAATAAGAAATATTACATTGACATTATAGAGACGA
AGCCTTCTAATGCAATAGGCATCGTTGAGACTGACGGTGAGGTAGATTTG
GCGCGTCGTGCTGGATTATAATGAACCTGGGAAACCACGGGCGGGTGCGT
CAAGTGGGGGGCCCGCCGGGAGCTGAAGGACGCGTCTGGGGTCCGGCGAA
CCGCGACTAGAGGCGGGCGATTGCCAGGACGAGACCGGCGGGACGGGAGC
CCGGCCC
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