EY728402

Overview
NameEY728402
Unique NameEY728402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:31..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.110e-59
Identity = 110/121 (90.91%), Postives = 118/121 (97.52%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 374
            LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVA++L+ARL
Sbjct:  290 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.702e-58
Identity = 109/122 (89.34%), Postives = 119/122 (97.54%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 377
            LGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAAC+G VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  291 LGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.861e-58
Identity = 111/122 (90.98%), Postives = 118/122 (96.72%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVANDLRARL 374
            LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVA++L+ARL
Sbjct:  290 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.341e-57
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 377
            LGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA LLDFTEKLEAAC+G VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  311 LGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.119e-41
Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 377
            LG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  288 LGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.119e-41
Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 377
            LG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  288 LGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.489e-40
Identity = 82/123 (66.67%), Postives = 97/123 (78.86%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 377
            LG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F   LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  288 LGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.489e-40
Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 377
            LG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  288 LGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.392e-40
Identity = 82/119 (68.91%), Postives = 92/119 (77.31%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 362
            LGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  296 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 414          
BLAST of EY728402 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.392e-40
Identity = 82/119 (68.91%), Postives = 92/119 (77.31%), Query Frame = 3
Query:   12 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVANDL 362
            LGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  CV TVESG MTKDLA  IHG    +  EH+LNT +F+D + ++L
Sbjct:  327 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 445          
The following BLAST results are available for this feature:
BLAST of EY728402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC7.110e-5990.91Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN2.702e-5889.34Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHC_SOLTU7.861e-5890.98Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA1.341e-5787.70Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_MICOH5.119e-4166.67Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME5.119e-4166.67Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT1.489e-4066.67Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE1.489e-4066.67Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHP_PIG7.392e-4068.91Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_BOVIN7.392e-4068.91Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-C07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728402 ID=EY728402; Name=EY728402; organism=Citrus sinensis; type=EST; length=645bp
CCACGCGTCCGCTTGGATTGATGACATCTGTACTGGTATGCCCTGATGGG
AAGACAATTGAAGCCGAAGCCGCCCATGGAACAGTCACCCGACACTACAG
AGTTCATCAGAAAGGTGGTGAAACTAGCACAAACAGCATAGCCTCCATCT
TTGCTTGGTCACGAGGGCTTGCACATAGGGCGAAGTTGGACAACAATGCT
AGGCTATTGGATTTTACTGAGAAACTAGAAGCTGCATGTGTTGGCACTGT
TGAATCTGGGAAGATGACCAAGGATCTTGCACTTATTATCCATGGATCTA
AGATGACTAGGGAACACTATCTGAATACTGAAGAGTTCATTGATGCTGTG
GCCAACGATCTAAGAGCAAGACTCTCTGGCAAAGCATGATTTTATGCTAC
ACATTCAAAGGTAAAGACTTGGGGAAGCTTCCTTTGGTTATCTTTTTCAT
ATTATGCTGAGAAGAAATAATTGAAGAGGGGAAAATTGGGGATTGGGATT
TGGTTCTCTTCTAATTCCTACAATAGACTGCTTTCCTGTTGATCGACAAA
CTCTCATTTTCATGCAAGCAAATGTCTTGAACATGGCTTGTTATAAACAA
AACTATTGCTGCCAAATTTACGTTCAAAAAAAAAAAAAAAAAAAA
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