EY728401

Overview
NameEY728401
Unique NameEY728401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF2P_ARATH (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.683e-83
Identity = 134/192 (69.79%), Postives = 156/192 (81.25%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDD---PSQGTIRSSPXMISLWE 589
            EKTGG+II RVGG+VYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQE PEGLTK EA E R KGKSL PICKL+KNGVY++LV+DVR+AFE SSLVKV+C G+  SDYKK+GAKLKELVPCVLLSFDDEQILMWRG++WKS + + P   +  + +   + D S  PS++    +  T  SSP MISLW+
Sbjct:  268 EKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLIPSLSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQ 459          

HSP 2 Score: 58.151 bits (139), Expect = 1.683e-83
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 3
Query:  588 KRAIEFTKALVLDENYLGPDDLLKKVEEFEGISQGREHSYPALIL 722
            +RA+E +KA++L+E  LGPDDLLKKVEE EG S   EH+Y A++L
Sbjct:  459 QRALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVL 503          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF2P_ORYSJ (CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.453e-75
Identity = 125/193 (64.77%), Postives = 157/193 (81.35%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS--SPXMISLW 586
            EK+GGK+I RVGG+V+L+RGRNYN RTRP+YPLMLWKPA PVYPKLIQEAPEGLTK EADE+RR+GK LLPICKLAKNG+Y+ LVRDVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFD+EQILM+RGK+WKS YP+P +    +   ++ ++ D   S   +DD  +  +R    P M  LW
Sbjct:  295 EKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGKEWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELW 487          

HSP 2 Score: 39.6614 bits (91), Expect = 4.453e-75
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 3
Query:  594 AIEFTKALVLDE---NYLGPDDLLKKVEEFEGISQGREHSYPALIL 722
            AIE + AL+LD+   + L PD LL +VE+F   SQ  EHS+PA+++
Sbjct:  490 AIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLV 535          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF2P_MAIZE (CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.406e-73
Identity = 122/195 (62.56%), Postives = 156/195 (80.00%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS--SPXMISLWEA 592
            EK+GGK+I RVGG+V+L+RGR+Y+ +TRP+YPLMLWKPA PVYPKLI+EAP+G TK EADE+RRKG+ LLPICKLAKNG+Y+TLV+DVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFDDEQILM RGK+WKS Y +P +    V   +L +    + S   SD  +Q  IR    P M  LW++
Sbjct:  299 EKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIREVLRPKMFKLWKS 493          

HSP 2 Score: 46.2098 bits (108), Expect = 1.406e-73
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 3
Query:  588 KRAIEFTKALVLDE---NYLGPDDLLKKVEEFEGISQGREHSYPALILVRGN 734
            K A++ + AL+LD+   N L PD LL  VEEF   SQ  EHS+PAL++  G+
Sbjct:  492 KSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGD 543          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF1P_ARATH (CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.657e-58
Identity = 105/190 (55.26%), Postives = 145/190 (76.32%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPP---SFSNPVDLDIAGDADGSGTPSDDPSQGTIRSSPXMISL 583
            EK GGK+I+R GG+++LFRGRNYN+RTRP++PLMLWKP APVYP+LIQ+ PEGLT+ EA  +RRKG+ L+PICKL KNGVY  LV++V+ AFE   LV+++C+GM  SD++K+GAKLK+LVPCVL+SF++EQIL+WRG++WKS    P         +++D A   D   + S + SQ T+  +P + S+
Sbjct:  308 EKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGDILEDIEVDTALPEDDEPSVSPNQSQ-TMTQNPPLDSM 496          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF1P_ORYSJ (CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.235e-56
Identity = 102/170 (60.00%), Postives = 128/170 (75.29%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP--EPPSFSNPVDLDIAGDADGSGT 526
            EK GGK+I   GG+++LFRGRNYNYRTRP YPLMLWKPAAPVYP+L+++ P+GLT  EA+++R++G+ L PICKL KNGVYL LV+ VR AFE   LV+V+C G++ SD +K+GAKLK+LVPC LLSF+ E ILMWRG DWKS  P  E   F    D  +     GSG+
Sbjct:  250 EKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLPPLEENDFKVASDQILNSKEAGSGS 419          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF1P_MAIZE (CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.970e-53
Identity = 95/146 (65.07%), Postives = 114/146 (78.08%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 460
            EK GGK+I R GG+++LFRGRNYNYRTRP +PLMLWKP APVYP+L+ + P GLT  EA E+R +G  L PICKL KNGVY  LV  VR AFE   LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DWKS  P
Sbjct:  250 EKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLP 395          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF1M_ORYSJ (CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.121e-40
Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 445
            +KTGG II R GG + L+RGR+YN + RP  PLMLWKPA PVYP+LI+   EGLT  E  E+R+KG  +  + KLAKNG Y +LV  VR+AF    LV+++ KG+  SDY+K+G KL++LVPC+++SFD EQI++WRGKD+
Sbjct:  224 DKTGGLIIHRHGGQLILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKDY 364          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF1M_ARATH (CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.338e-38
Identity = 76/164 (46.34%), Postives = 117/164 (71.34%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDAD 514
            +KT G+++ +  G + L+RGRNY+ + RP+ PLMLWKP  PVYP+LI+   +GL+  E   +R+KG ++  + KLAKNG Y +LV  VR+AF  S LV+++C G+   DYKK+GAKL++LVPC+L++FD EQ+++WRGKD+K    E   +S+ +  + + D+D
Sbjct:  226 DKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPP-KEDDEYSSFIHRESSIDSD 388          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF2M_ORYSJ (CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.209e-38
Identity = 72/139 (51.80%), Postives = 102/139 (73.38%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 439
            +KTGGK+I+R   ++ L+RGRNY+ + RPQ PLMLWKP AP+YP+L+Q   +GLT  +  ELR  G +  P+ KL +NGVY+ +V  VR AF+   +V+++C  + +SD KK+G KL++LVPCV L F DEQI++WRGK
Sbjct:  212 DKTGGKVIYRNINILILYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGK 350          
BLAST of EY728401 vs. ExPASy Swiss-Prot
Match: CAF2M_ARATH (CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.049e-34
Identity = 66/139 (47.48%), Postives = 97/139 (69.78%), Query Frame = 2
Query:   23 EKTGGKIIFRVGGLVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 439
            EK+GGKI++R   ++ L+RGRNY+ ++RP  PLMLWKP  P+YP+L++   +GL   E  E+R +G     + KL +NGVY+ +V  VR  FE   +V+++C  +  SD K++G KLKE+VPCV + F DEQI++WRGK
Sbjct:  210 EKSGGKIVYRNINILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348          
The following BLAST results are available for this feature:
BLAST of EY728401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CAF2P_ARATH1.683e-8369.79CRS2-associated factor 2, chloroplastic OS=Arabido... [more]
CAF2P_ORYSJ4.453e-7564.77CRS2-associated factor 2, chloroplastic OS=Oryza s... [more]
CAF2P_MAIZE1.406e-7362.56CRS2-associated factor 2, chloroplastic OS=Zea may... [more]
CAF1P_ARATH2.657e-5855.26CRS2-associated factor 1, chloroplastic OS=Arabido... [more]
CAF1P_ORYSJ7.235e-5660.00CRS2-associated factor 1, chloroplastic OS=Oryza s... [more]
CAF1P_MAIZE1.970e-5365.07CRS2-associated factor 1, chloroplastic OS=Zea may... [more]
CAF1M_ORYSJ1.121e-4056.03CRS2-associated factor 1, mitochondrial OS=Oryza s... [more]
CAF1M_ARATH2.338e-3846.34CRS2-associated factor 1, mitochondrial OS=Arabido... [more]
CAF2M_ORYSJ5.209e-3851.80CRS2-associated factor 2, mitochondrial OS=Oryza s... [more]
CAF2M_ARATH2.049e-3447.48CRS2-associated factor 2, mitochondrial OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728401 ID=EY728401; Name=EY728401; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGCGGACGCGTGGGAAAAAACAGGGGGGAAGATCATTTTTC
GAGTTGGTGGTCTAGTTTATCTTTTCCGGGGCAGGAACTATAACTATCGC
ACTCGTCCTCAATACCCACTGATGCTCTGGAAACCAGCTGCTCCCGTTTA
CCCAAAGCTTATCCAAGAAGCCCCTGAAGGATTGACAAAACATGAAGCCG
ATGAGTTGCGGAGGAAAGGGAAATCCCTGCTGCCTATTTGTAAATTAGCA
AAAAATGGAGTGTACCTTACCCTGGTGAGAGATGTTAGGAATGCTTTTGA
AGGAAGTTCATTGGTTAAGGTTAACTGCAAAGGGATGCATGCAAGTGATT
ACAAGAAGTTGGGTGCTAAGCTTAAGGAATTGGTTCCCTGCGTGCTATTA
TCTTTTGACGATGAACAGATATTGATGTGGAGAGGAAAAGATTGGAAATC
AATGTATCCAGAACCTCCTTCATTTTCAAATCCTGTTGACCTTGACATTG
CTGGAGATGCAGATGGTTCAGGGACGCCTAGTGATGACCCTAGCCAAGGA
ACCATTAGATCAAGTCCTANAATGATATCCCTTTGGGAAGCGCGCAATTG
AATTCACCAAGGCATTGGTACTGGATGAAAATTATCTTGGTCCTGATGAT
CTTTTGAAGAAGGTTGAAGAATTTGAGGGTATTTCCCAGGGCCGAGAACA
CTCCTATCCAGCGTTAATTTTGGTCAGGGGAAACCGGGCCCATATTCCAT
GGGCAAAGTACCAAGATGGTCCCCAGAGTCAGAATAGTACGAGGATGAAT
TTATCCTGCGGATGACGTCACGAAGACACGAATTTCGGAGAGCGCACCGC
CAAGTTGTCCAGGAGGGGCTCCG
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