EY728398

Overview
NameEY728398
Unique NameEY728398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 1.080e-75
Identity = 144/192 (75.00%), Postives = 164/192 (85.42%), Query Frame = 1
Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R*HPAGSAGCV 696
            K+VFETT+G+E ITSF+ MGIK+D+LRG+Y+YGFEKPSAIQQRAVMPI++GRDVIAQAQSGTGKTSMIAL+VCQ VDTSSREVQALILSPTRELATQTEK I AIG   NIQAHAC+GG SVGEDIRKLEHGVHVVSG PG VCDMIKR++ RTRAI L +L+E D+ML + F D+  DV R  P     C+
Sbjct:   22 KLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCL 213          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.080e-75
Identity = 143/182 (78.57%), Postives = 158/182 (86.81%), Query Frame = 1
Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R 666
            ++VFET++GVE I SF  MGIKDDLLRG+YQYGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMIALTVCQ VDT S EVQALILSPTRELA QTEKVILAIGD+IN+QAHAC+GGKSVGEDIRKLEHGV VVSG PG VCDMIKR+  RTR I L +L+E D+ML + F D+  DV R
Sbjct:    5 RLVFETSKGVEPIASFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKDQIYDVYR 186          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.000e-75
Identity = 142/191 (74.35%), Postives = 161/191 (84.29%), Query Frame = 1
Query:  124 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R*HPAGSAGCV 696
            + FET+ GVE I+SFD MGI+DDLLRGIY YGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMI+L+VCQ VDT+ REVQALILSPTRELA QTE+V+LAIGDFINIQ HAC+GGKS+GEDIRKLEHGVHVVSG PG VCDMIKR+  RTRAI L +L+E D+ML + F D+  DV R  P     C+
Sbjct:   19 LTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCL 209          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: RH34_ORYSJ (DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica GN=Os03g0566800 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.537e-74
Identity = 140/191 (73.30%), Postives = 161/191 (84.29%), Query Frame = 1
Query:  124 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R*HPAGSAGCV 696
            + FET+ GVE I+SFD MGI++DLLRGIY YGFEKPSAIQQRAV+PII GRDVIAQAQSGTGKTSMI+L+VCQ VDT+ REVQALILSPTRELA QTE+V+LAIGD+INIQ HAC+GGKS+GEDIRKLEHGVHVVSG PG VCDMIKR+  RTRAI L +L+E D+ML + F D+  DV R  P     C+
Sbjct:   19 LTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCL 209          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.603e-63
Identity = 121/191 (63.35%), Postives = 152/191 (79.58%), Query Frame = 1
Query:  124 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R*HPAGSAGCV 696
            +VFETT+G++ I SFD MG+ D +LRG+Y YG++KPS IQQRA++PI+KGRDVIAQAQSGTGKTSMIA++VCQ V+ SSR+VQ L+LSP+RELA+QTEK I AIG   NIQAHAC+GGKS+GEDI+KLE GVH VSG PG V DMIKR + +T+A+ L VL+E D+ML +   D+  DV R  P     C+
Sbjct:   10 LVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCL 200          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.159e-61
Identity = 111/182 (60.99%), Postives = 149/182 (81.87%), Query Frame = 1
Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R 666
            K+ FE++E V+  T+FDAMG+K+DLLRGIY Y FEKPSAIQQRA++PII+GRDVIAQAQSGTGKT+  ++++ Q++DT+ RE QAL+LSPTRELA Q + V+LA+GD++N+Q HAC+GG SVGEDIRKL++G H+VSG PG V DMI+R+  RT+ I + +L+E D++L   F D+  DV R
Sbjct:   11 KLAFESSEHVKVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDVYR 192          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.186e-60
Identity = 114/192 (59.38%), Postives = 150/192 (78.12%), Query Frame = 1
Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R*HPAGSAGCV 696
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+G PG V DMI+R++ RTRAI + VL+E D+ML + F ++  DV R  P  +  C+
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 220          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.186e-60
Identity = 114/192 (59.38%), Postives = 150/192 (78.12%), Query Frame = 1
Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R*HPAGSAGCV 696
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+G PG V DMI+R++ RTRAI + VL+E D+ML + F ++  DV R  P  +  C+
Sbjct:   20 KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 211          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.186e-60
Identity = 114/192 (59.38%), Postives = 150/192 (78.12%), Query Frame = 1
Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R*HPAGSAGCV 696
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q HAC+GG +VGEDIRKL++G HVV+G PG V DMI+R++ RTRAI + VL+E D+ML + F ++  DV R  P  +  C+
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 220          
BLAST of EY728398 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.870e-60
Identity = 113/192 (58.85%), Postives = 150/192 (78.12%), Query Frame = 1
Query:  121 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGIPGTVCDMIKRKAWRTRAITLWVLEECDDMLEQRFXDRXCDV*R*HPAGSAGCV 696
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+LA+GD++N+Q H+C+GG +VGEDIRKL++G HVV+G PG V DMI+R++ RTRAI + VL+E D+ML + F ++  DV R  P  +  C+
Sbjct:   20 KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCL 211          
The following BLAST results are available for this feature:
BLAST of EY728398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH2_ARATH1.080e-7575.00DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A3_NICPL1.080e-7578.57Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
RH2_ORYSJ7.000e-7574.35DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
RH34_ORYSJ4.537e-7473.30DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sa... [more]
RH34_ARATH3.603e-6363.35DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
FAL1_USTMA1.159e-6160.99ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A3_XENTR2.186e-6059.38Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_DANRE2.186e-6059.38Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
I4A3A_XENLA2.186e-6059.38Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
IF4A3_SALSA4.870e-6058.85Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728398 ID=EY728398; Name=EY728398; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGCTCTCATTGATTCTTTGATTTCGAAGAGTAATTGTTGCG
AATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAGAGGAGGGG
GCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGAAGGAGTG
GAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATCTGTTGCG
TGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAACAGAGGG
CCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGGCCCAGTCT
GGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGACGGTCGA
TACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACGAGGGAGC
TGGCGACGCAGACAGAGAAAGTGATTTTGGCAATTGGTGATTTTATTAAC
ATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAAGATATTAG
GAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAATCCCGGGTACAGTCT
GTGATATGATTAAGAGGAAAGCTTGGCGTACTAGAGCTATCACATTATGG
GTGCTTGAGGAGTGTGATGATATGCTGGAGCAGAGGTTCCNGGATCGANT
TTGTGATGTGTAGCGTTAGCATCCCGCGGGATCTGCGGGGTGTGTTGGAG
TCTGGCCGGCTGGGCGTCGGAAGCTGGGGGGAGGAGCGGCGGNGTGTGGA
GGGATGCTCGGNGAGAAGGGGGGACGAGCGGCGGCGCGGGGGCGTGGGGG
TCGATTCGCCCGGCTCCTGCGTTCCGGATACGGACGGGCTGGGGCGTGGG
GCGCGCGCGGGCGGGGTGGGGGGCT
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