EY728393

Overview
NameEY728393
Unique NameEY728393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11741 contig Csv1_Contig11741:1..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.697e-56
Identity = 103/140 (73.57%), Postives = 121/140 (86.43%), Query Frame = 2
Query:   89 TGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEETENSKGF--DRGITIW 502
            +G RVSQLSYGA V+FGNQLDV EAK+LL   RD G+NFFDNAEVYANGRAEEIMGQA+R+LGW+RSD+VVSTK+FWGGQGPNDKGLSRKHIV+G + SLKRLDMDYVDV+YCHRPD +TP+EET  +  +  D G+  +
Sbjct:    9 SGLRVSQLSYGAWVTFGNQLDVKEAKALLQACRDAGVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCHRPDATTPVEETVRAMNWVIDHGMAFY 148          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.136e-35
Identity = 71/142 (50.00%), Postives = 104/142 (73.24%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI++G KASL+RL +DYVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPDPNTPMEET 169          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.785e-34
Identity = 70/142 (49.30%), Postives = 104/142 (73.24%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI++G KASL+RL ++YVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEET 169          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.785e-34
Identity = 70/142 (49.30%), Postives = 104/142 (73.24%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI++G KASL+RL ++YVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEET 169          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.332e-34
Identity = 70/142 (49.30%), Postives = 104/142 (73.24%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI++G KASL+RL ++YVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEET 169          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.332e-34
Identity = 70/142 (49.30%), Postives = 104/142 (73.24%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ GW+RS +V++TKIFWGG+   ++GLSRKHI++G KASL+RL ++YVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEET 169          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.723e-32
Identity = 61/125 (48.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI++G K SL+RL ++YVDV++ +RPD++TP+EE
Sbjct:   78 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 202          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.723e-32
Identity = 61/125 (48.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI++G K SL+RL ++YVDV++ +RPD++TP+EE
Sbjct:   96 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 220          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.723e-32
Identity = 61/125 (48.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI++G K SL+RL ++YVDV++ +RPD++TP+EE
Sbjct:   85 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 209          
BLAST of EY728393 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.723e-32
Identity = 61/125 (48.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASLKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ GW+RS +V++TK++WGG+   ++GLSRKHI++G K SL+RL ++YVDV++ +RPD++TP+EE
Sbjct:   78 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 202          
The following BLAST results are available for this feature:
BLAST of EY728393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
KCAB_ORYSJ3.697e-5673.57Probable voltage-gated potassium channel subunit b... [more]
KCAB2_XENLA6.136e-3550.00Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_HUMAN1.785e-3449.30Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN1.785e-3449.30Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT2.332e-3449.30Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE2.332e-3449.30Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT3.723e-3248.80Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT3.723e-3248.80Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU3.723e-3248.80Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE3.723e-3248.80Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-B08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728393 ID=EY728393; Name=EY728393; organism=Citrus sinensis; type=EST; length=800bp
CCACGCGTCCGCCAAAATCGATTCCCCCCTCTCTTTCTACTGAAACCCTA
AATCTAAAATCAGAGCCAAGGAAATATTGATTCAAGAAACGGGGCCGAGA
GTGAGCCAGCTCTCGTACGGAGCGTGAGTCAGCTTCGGGAACCAGCTGGA
CGTGACGGAGGCGAAGTCGCTCTTGCATTGCTCCCGCGACCACGGCATCA
ACTTCTTCGACAATGCCGAGGTCTACGCCAACGGCCGCGCGGAAGAGATC
ATGGGCCAGGCCATTCGTGAGCTCGGGTGGAAGCGATCCGACATCGTCGT
TTCCACCAAGATCTTTTGGGGCGGCCAGGGCCCCAACGATAAAGGCCTCT
CCAGAAAACACATCGTCAAGGGCACCAAAGCTTCCTTGAAACGCCTCGAC
ATGGACTACGTCGACGTTATTTATTGTCACAGGCCAGACACATCGACACC
GATAGAGGAGACGGAAAATTCCAAGGGATTTGACAGAGGCATCACTATCT
GGTGCAGGATAATCCATAATATCAGCCCTTTCTATGTTGTTTTTATTTGG
AATGGAACTAAATAATTATTTAACAGTGACCACCTCTACAGCTGTCATTG
GCCACAAGAATTACGGATGGGGACTTCTTGCCTATTGATTTAATATGAGT
TTTCCCTCACTTTCATGTGAATTTGCATCAATAGACGTGAGTGACGTGTT
GGGAACTGTATCCTATTCTAGCTGTCAATTTTATGCTCATGGTGCTATGG
AGTAACGCCTGAACATCTGGGAGAAGCAGCAAACATGAAGAGTTGACCAG
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