EY728330

Overview
NameEY728330
Unique NameEY728330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728330 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.760e-32
Identity = 67/100 (67.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:  286 EKENLCLYGLPNETWXXXXXXXXXXXXXXXXXXGINFAKDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQ 585
            EKENLCLYG PNE W                  GINFA+DGM EKDWLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G AK+
Sbjct:   44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKK 143
The following BLAST results are available for this feature:
BLAST of EY728330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.760e-3267.00PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-D02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728330 ID=EY728330; Name=EY728330; organism=Citrus sinensis; type=EST; length=824bp
CCACGCGTCCGATTATGTTTGGCTGCTATACTCTATGTCCATAGTCAAAT
GTCATCCCTTTTTGGTTTGTTTTTATGGTTTATGTCCAAATGTTGCTAGA
GCAGTTGATGTCAATAAAAGAGTATCTTCCTGGACTAACAGTCTCCTTCT
GCATTCTTAATGTTTTATGAAACCAAGTACTTTTTTGTGCTTTTAGTTAT
TGGTATGATAAAATGAGATCTGATTATATGAACAATTCAAGGCAGATTGC
ACATTTTTATTTAAAATACTAGTATTGTGCATACAGAAAAAGAGAACTTG
TGCCTATACGGGCTTCCTAATGAGACATGGGAAGTTAATCTGCCTGTTGA
GGAGGTGCCTCCCGAGCTCCCTGAGCCAGCATTAGGTATAAACTTTGCTA
AAGATGGAATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTGCACAGT
GATTCATGGTTGCTTGCTGTAGCTTTTTATTTTGGTGCACGCTTTGGATT
TGGCAAAAATGAAAGGAAGAAACTTTTCCAGATGATAAATGATCTCCCAA
CCATCTTTGAAGTTGTAACTGGAAATGCTAAGCAACCAAGGACCTATCTG
CTAATCACAATAGCAGCAAAAGCAATCGAGTGGAAGTCTCGTCCAGCTGA
ATCACAACCAAAGCAGTGAAAATGTCTCACCCACCGAGGACGATGATGAT
GCCGGGGATGAAGAGGAGGAGATGAGGAGACGGGTGCCCCCTGGGGACCA
TGCGGGGAGTAATATGGGCCCGAGGAATTCGAGAATCTGCTGCGGTGTCN
TGGGGAAAAGGGTCCCGCGCGGAG
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