EY728286

Overview
NameEY728286
Unique NameEY728286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728286 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.542e-38
Identity = 122/315 (38.73%), Postives = 149/315 (47.30%), Query Frame = 1 
Query:   13 LSPNGDFEEDNFAVYGESGLEAVHKAKDGAVSRQYQTRHXXXXXXXXXXXXXXXXXXXXXXXSAHRSSEDTENAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKAESEGEAEGMADAHDVEGDGTSLPFSERFLLSVKPLAKHV--SPSLHDKE----KGSRVFYGNDSFYVLFRLHQTLYERINQQRLIHHLQRGNGRLQMIQALLIYMARS*MHFTMYLDGSSDNTKFEDDCRAIIGTHPMVFYIWTAAI*LVNIFKQLQLMRWTTTSS----TYAYEKTESWK-IVDVVIMKCSRPLL--DGIISYEC 918
            LSPNGDFEEDNFAVY ++  E   KA D   +     R                        +A RSSED+ N                                 NK ESEGEAE MADAHD E +G++LP S RFLL VKPL K+V  + +LHDK+    K S+VFYGNDSFYVLFRLH+ LYERI   ++      G  R    +      AR        LDG+SDN KFEDDCRAIIGT   + +     I      K LQ++      +     Y YEK+   + I D V    +R LL  + I   EC
Sbjct:  920 LSPNGDFEEDNFAVYAKTDFETFSKANDSTGNNISGDRSREGEPSCLETRAENDAEGDE---NAARSSEDSRNEYENGDVSGTESGGGEDPEDDLDNN--------NKGESEGEAECMADAHDAEENGSALPVSARFLLHVKPLVKYVPSAIALHDKDKDSLKNSQVFYGNDSFYVLFRLHRILYERILSAKVNSSSPEGKWRTSNTKNPTDSYARFMTALYNLLDGTSDNAKFEDDCRAIIGTQSYILFTLDKLI--HKFIKHLQVVVADEMDNKLLQLYFYEKSRRPETIFDAVYYDNTRVLLPDENIYRIEC 1221
The following BLAST results are available for this feature:
BLAST of EY728286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SIN3_ARATH4.542e-3838.73Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-H01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728286 ID=EY728286; Name=EY728286; organism=Citrus sinensis; type=EST; length=948bp
CCACGCGTCCGATTATCTCCAAATGGAGATTTCGAGGAGGATAATTTTGC
AGTTTATGGAGAATCTGGTTTGGAGGCTGTGCATAAAGCAAAGGATGGTG
CTGTTAGCAGACAATATCAAACCAGACATGGAGAAGAAGTATGCTGTGGG
GAGGCTGGTGGAGAAAATGAGGCTGATGCTGATGATGAAGGTGAGGAGAG
CGCTCACAGGTCTTCAGAGGACACCGAGAATGCTTCTGAGAATGGTGATG
TATCTGGAAGTGAGTCTGGTGATGGCGAGGGTAGCTCTCGGGAAGAGCAT
GAGGAAGATGGAGACCAGGATGAGCATGATAACAAGGCAGAGAGTGAAGG
AGAAGCTGAAGGGATGGCTGATGCTCATGATGTTGAAGGAGATGGAACAT
CATTGCCATTTTCAGAACGTTTTCTACTATCTGTGAAGCCTCTAGCAAAG
CATGTCTCCCCATCGCTACATGACAAGGAGAAAGGCTCTAGAGTTTTCTA
TGGCAATGATTCCTTCTATGTGCTTTTTAGGCTTCACCAAACATTGTATG
AGAGAATCAATCAGCAAAGATTAATTCATCATCTGCAGAGAGGAAATGGA
AGACTTCAAATGATTCAAGCCCTACTGATCTATATGGCCAGGTCATGAAT
GCACTTTACCATGTACCTTGACGGTTCTTCTGATAATACAAAATTTGAGG
ATGATTGCCGAGCTATTATTGGCACTCATCCTATGGTTTTTTACATTTGG
ACAGCTGCTATATAACTGGTCAACATCTTCAAGCAATTGCAACTGATGAG
ATGGACAACAACTTCTTCCACTTATGCATATGAGAAAACAGAAAGCTGGA
AGATTGTGGATGTAGTTATCATGAAATGCTCGCGTCCACTTCTTGATGGA
ATAATTTCGTATGAATGTTCTCCCTACCCACCGCCTTTCATTCCGGTT
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