EY728266

Overview
NameEY728266
Unique NameEY728266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728266_ssr606 microsatellite EY728266_ssr606:606..617. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY728266 vs. ExPASy Swiss-Prot
Match: DRP2A_ARATH (Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 7.257e-86
Identity = 185/296 (62.50%), Postives = 204/296 (68.92%), Query Frame = 1 
Query:   13 VHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEARKMVVALVDMERAFVPPQHFIRLVXXXXXXXXXXXXVKTRSSKKANEAEQAILNRATSPXXXXXXXXXSLKAMKDKSSQAEKEANEASALKTAGPEGEITAGFLLKKSAKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVIALXXXXXXXXXXXXXXXAKSSKDKKANGPDSGKAPSLCI*ILAKFLIKTV*KPHMLXV*KLRALLIXANGITDK--------QXISARGGLCKVLKVSYDASDLSDGLL 876
            VHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEA+KMVVALVDMERAFVPPQHFIRLV            +K RSSKK  +AEQ++L+RATSP         SLK+MKDK S  +KE  E S LKTAGPEGEITAG+L+KKSAKTNGWS+RWFVLNEKTGKLGYTKKQEER+FRG I L               +KSSKDKKANGPDS K P L   I  K   KTV K H        AL++ A  + DK        + I ARGG  +V  VS   S LS+G L
Sbjct:  432 VHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEELKGRSSKKGQDAEQSLLSRATSPQPDGPTAGGSLKSMKDKPSPQDKETPEVSGLKTAGPEGEITAGYLMKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRGTITLEECTIEEIPEDEVEKSKSSKDKKANGPDS-KGPGLVFKITCKVPYKTVLKAH-------NALVLKAESVVDKNEWINKLQKVIQARGG--QVGSVSMRQS-LSEGSL 716
[Close]
BLAST of EY728266 vs. ExPASy Swiss-Prot
Match: DRP2B_ARATH (Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 3.155e-81
Identity = 173/284 (60.92%), Postives = 193/284 (67.96%), Query Frame = 1 
Query:   13 VHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEARKMVVALVDMERAFVPPQHFIRLVXXXXXXXXXXXXVKTRSSKKANEAEQAILNRATSP-XXXXXXXXXSLKAMK------DKSSQAEKEANEASALKTAGPEGEITAGFLLKKSAKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVIALXXXXXXXXXXXXXXXAKSSKDKKANGPDSGKAPSLCI*ILAKFLIKTV*KPHMLXV*KLRALLIXANGITDK--------QXISARGG 819
            VHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEA+KMVVALVDMERAFVPPQHFIRLV            +K RSSKK  +AEQ++LNRATSP          SLK+++      DK    EKE  E S LKTAGPEGEITAG+L+KKSAKTNGWS+RWFVLNEKTGKLGYTKKQEER+FRG + L               +KSSKDKK+NGPDS K P L   I  +   KTV K H        AL++ A  + DK        + I ARGG
Sbjct:  432 VHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEELKGRSSKKGQDAEQSLLNRATSPQPDGPSSTGGSLKSLRDKLMPQDKDKDKEKETPEVSGLKTAGPEGEITAGYLMKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEERNFRGTVTLEECSIEEISDDEGEKSKSSKDKKSNGPDS-KGPGLVFKITCRVPYKTVLKAH-------NALVLKAESMVDKNEWINKLQKVIQARGG 707
The following BLAST results are available for this feature:
BLAST of EY728266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DRP2A_ARATH7.257e-8662.50Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 S... [more]
DRP2B_ARATH3.155e-8160.92Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-F04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728266 ID=EY728266; Name=EY728266; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGGGTACACCGTGTTCTGGTTGATATAGTTTCTGCTTCTGC
AAATGCTACACCAGGCCTGGGAAGATATCCTCCTTTTAAGAGAGAGGTTG
TGGCCATTGCAAGTGCTGCTTTAGATGGGTTTAAGAATGAAGCAAGAAAG
ATGGTGGTTGCACTAGTTGACATGGAGAGAGCTTTTGTCCCTCCCCAACA
TTTCATTCGTTTGGTGCAGAGGAGGATGGAAAGACAGCGGCGAGAGGAGG
AGGTGAAGACGCGATCTTCGAAGAAAGCAAATGAGGCAGAACAAGCAATA
CTGAATAGGGCAACCAGTCCTCAAACAGGTGGTCAGCAAACTGGTGGAAG
TTTAAAAGCAATGAAGGATAAATCCAGTCAAGCAGAGAAAGAAGCAAATG
AAGCTTCTGCTTTAAAGACTGCAGGCCCTGAAGGAGAAATAACAGCAGGT
TTCTTGTTGAAGAAAAGTGCAAAAACTAATGGATGGAGCAAGCGATGGTT
TGTTCTGAATGAGAAGACTGGAAAGCTGGGCTACACCAAAAAGCAAGAGG
AAAGGCATTTTCGTGGTGTCATTGCTTTGGAGGAATGTAATATTGAGGAG
ATTCCGGAGGAGGAGGAACCTCCAGCAAAAAGTTCGAAGGATAAAAAGGC
TAATGGACCCGATTCTGGGAAAGCACCNAGTCTTTGTATTTAGATACTAG
CAAAATTCCTTATAAAAACTGTCTGAAAGCCCCACATGCTGNTTGTTTGA
AAGCTGAGAGCACTGCTGATAANNGCGAATGGNATAACAGATAAGCAANG
TATTTCAGCTAGGGGAGGACTTTGTAAAGTGCTGAAAGTGTCATACGATG
CGTCAGATCTTTCTGATGGTCTCTTGATACATGCTCGAGACTGCTGACCC
TGAGAGAACTTCATGATGNC
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