EY728264

Overview
NameEY728264
Unique NameEY728264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: PHY2_SYNY3 (Phytochrome-like protein cph2 OS=Synechocystis sp. (strain PCC 6803) GN=cph2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.826e-30
Identity = 72/163 (44.17%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  181 LSFKDGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPRDLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVTVSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDR 669
            +S  D LT + NR  FDS  EREW+R    R+PL++LL DVDFFK +ND YGH  GD+CL +IA  ++     P DLVARYGGEEF ++L     E A  V E  Q  +   AI H +S  G  VT+SIG     P+   +    ++  D  LY AK  GR++
Sbjct: 1099 ISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEVANLAIPHTVSGTG-HVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRNQ 1260          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: YDDV_SHIBS (Diguanylate cyclase yddV OS=Shigella boydii serotype 4 (strain Sb227) GN=yddV PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  193 DGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPR--DLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVTVSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRIE 675
            D LT + NRR   + F+RE   A     PLSVL++DVD FK+ ND +GH+ GD+ L +++Q      D  R  D V RYGG+EF+++L  A      + AER +  ++K  +  A   +G  + +S+  G  + +G  D    I+  D+ LY AK+ GR+R+E
Sbjct:  298 DVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAF---YDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAA---NGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: YDDV_ECOLI (Diguanylate cyclase yddV OS=Escherichia coli (strain K12) GN=yddV PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  193 DGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPR--DLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVTVSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRIE 675
            D LT + NRR   + F+RE   A     PLSVL++DVD FK+ ND +GH+ GD+ L +++Q      D  R  D V RYGG+EF+++L  A      + AER +  ++K  +  A   +G  + +S+  G  + +G  D    I+  D+ LY AK+ GR+R+E
Sbjct:  298 DVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAF---YDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAA---NGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: YDDV_ECO57 (Diguanylate cyclase yddV OS=Escherichia coli O157:H7 GN=yddV PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  193 DGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPR--DLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVTVSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRIE 675
            D LT + NRR   + F+RE   A     PLSVL++DVD FK+ ND +GH+ GD+ L +++Q      D  R  D V RYGG+EF+++L  A      + AER +  ++K  +  A   +G  + +S+  G  + +G  D    I+  D+ LY AK+ GR+R+E
Sbjct:  298 DVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAF---YDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAA---NGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: YDDV_SHISS (Diguanylate cyclase yddV OS=Shigella sonnei (strain Ss046) GN=yddV PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 58/161 (36.02%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  193 DGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPRDLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVTVSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRIE 675
            D LT + NRR   + F+RE   A     PLSVL++DVD FK+ ND +GH+ GD+ L +++Q     +    D V RYGG+EF+++L  A      + AER +  ++K  +  A   +G  + +S+  G  + +G  D    I+  D+ LY AK+ GR+R+E
Sbjct:  298 DVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKVSQAFYDNVHS-SDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAA---NGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: PLED_CAUCR (Response regulator pleD OS=Caulobacter crescentus GN=pleD PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 61/168 (36.31%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  178 DLSFKDGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPRDLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGR---RVTVSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRI 672
            +L+  D LT + NRR      +   +RA     P+S LL+D+DFFK+ ND +GH  GD+ L E A  L+  +    DL  RYGGEEFVV++P      A ++AER +  +       A   HGR    VT+SIG      +G    A  ++  D+ +Y AK  GR+ +
Sbjct:  287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRA-IDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVA---HGREMLNVTISIGVSATAGEGDTPEA-LLKRADEGVYQAKASGRNAV 449          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: YCDT_ECOLI (Inner membrane protein ycdT OS=Escherichia coli (strain K12) GN=ycdT PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.603e-18
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  178 DLSFKDGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPRDLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVTVSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRI 672
            +++ +D LTNI NR  F +  E   + A  ++ P  V+++D+D FK+ ND +GH  GDQ +  +   +  ++  P DL+AR GGEEF VLL   D E A+ +AER +  +++    +      ++VT+SIGA  V  +   +     R  D  LY AK+ GR+++
Sbjct:  280 NIAHRDPLTNIFNRNYFFN--ELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNIIGKSI-RPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTISIGA-VVTQENALNPNEIYRLADNALYEAKETGRNKV 440          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: ADRA_ECOLI (Protein adrA OS=Escherichia coli (strain K12) GN=adrA PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 52/167 (31.14%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  181 LSFKDGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPRDLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVT--VSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRIE 675
            +S +DG+T + NRR +++    E++      +  ++L++D+D FK  ND +GH  GD+ +V + + L + L G  D++ R+GG+EF V++    AE A     R    L    +     P+  +VT  +S+G   + P     R  ++++ D  LY AKK GR+R E
Sbjct:  209 MSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRG-SDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL-----PNTPQVTLRISVGVAPLNPQMSHYRE-WLKSADLALYKAKKAGRNRTE 368          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: ADRA_ECOL6 (Protein adrA OS=Escherichia coli O6 GN=adrA PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 52/167 (31.14%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  181 LSFKDGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTLSLALDGPRDLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVT--VSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRIE 675
            +S +DG+T + NRR +++    E++      +  ++L++D+D FK  ND +GH  GD+ +V + + L + L G  D++ R+GG+EF V++    AE A     R    L    +     P+  +VT  +S+G   + P     R  ++++ D  LY AKK GR+R E
Sbjct:  209 MSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRG-SDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRL-----PNTPQVTLRISVGVAPLNPQMSHYRE-WLKSADLALYKAKKAGRNRTE 368          
BLAST of EY728264 vs. ExPASy Swiss-Prot
Match: YDAM_ECOLI (Uncharacterized protein ydaM OS=Escherichia coli (strain K12) GN=ydaM PE=4 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.948e-17
Identity = 65/161 (40.37%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  193 DGLTNIANRRRFDSGFEREWERAGNERKPLSVLLLDVDFFKQYNDLYGHSQGDQCLVEIAQTL-SLALDGPRDLVARYGGEEFVVLLPXADAEIARKVAERCQRLLQKKAIVHALSPHGRRVTVSIGAGTVVPDGRADRAGFIRTVDQQLYAAKKHGRDRI 672
            D +T + NRR+F    E    +     +  S+LL+D D FK  NDLYGHS+GD+ L  +A+TL S A  G  DLV R+GGEEFV+LLP    + A  +AE   R+   K  +  L     R TVSIG      +G        + VD  LY AK  GR+R+
Sbjct:  256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKG--DLVFRWGGEEFVLLLPRTPLDTALSLAETI-RVSVAKVSISGLP----RFTVSIGVAH--HEGNESIDELFKRVDDALYRAKNDGRNRV 407          
The following BLAST results are available for this feature:
BLAST of EY728264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PHY2_SYNY31.826e-3044.17Phytochrome-like protein cph2 OS=Synechocystis sp.... [more]
YDDV_SHIBS1.186e-2136.81Diguanylate cyclase yddV OS=Shigella boydii seroty... [more]
YDDV_ECOLI1.186e-2136.81Diguanylate cyclase yddV OS=Escherichia coli (stra... [more]
YDDV_ECO571.186e-2136.81Diguanylate cyclase yddV OS=Escherichia coli O157:... [more]
YDDV_SHISS2.023e-2136.02Diguanylate cyclase yddV OS=Shigella sonnei (strai... [more]
PLED_CAUCR1.227e-1836.31Response regulator pleD OS=Caulobacter crescentus ... [more]
YCDT_ECOLI1.603e-1834.55Inner membrane protein ycdT OS=Escherichia coli (s... [more]
ADRA_ECOLI1.357e-1731.14Protein adrA OS=Escherichia coli (strain K12) GN=a... [more]
ADRA_ECOL61.357e-1731.14Protein adrA OS=Escherichia coli O6 GN=adrA PE=4 S... [more]
YDAM_ECOLI3.948e-1740.37Uncharacterized protein ydaM OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-F02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728264 ID=EY728264; Name=EY728264; organism=Citrus sinensis; type=EST; length=880bp
CATGAGGCCGACTACCGGGCGCTGACCAAGGACAACGGTTATGTATGGAT
CCGCGACGTTGTGCACGTCGTGCGCAACGCCAGCGGCGAGGTCGATGCGC
TGATCGGCTTCATGTTCGACATCACCGAGCGCAAGAAGACCGAGGAAAAG
CTGCTGAACCTGCAGAAGGAGCTGGAGGACCTGTCCTTCAAGGATGGCTT
GACGAACATTGCCAACCGGCGTCGCTTCGACAGTGGTTTTGAACGGGAGT
GGGAGCGCGCGGGCAACGAGCGCAAGCCGCTGTCGGTGTTGTTGCTCGAC
GTCGATTTTTTCAAGCAGTACAACGATCTCTACGGCCACTCACAGGGCGA
CCAATGCCTGGTGGAGATCGCCCAGACGCTGAGCCTGGCATTGGACGGGC
CGCGCGATCTGGTGGCGCGCTATGGCGGCGAAGAGTTTGTCGTGCTGCTG
CCCGANGCGGATGCGGAAATCGCGCGCAAGGTTGCCGAACGTTGCCAGCG
CTTGCTGCAGAAAAAGGCGATCGTGCATGCGCTGTCACCGCATGGCAGGC
GGGTCACCGTCAGCATCGGCGCGGGCACGGTGGTGCCCGATGGGCGCGCG
GACCGCGCCGGCTTCATCAGGACCGTGGACCAGCAGCTGTACGCGGCCAA
GAAACACGGGCGCGACCGGATCGAGCACGTGCGGTGGGGGGGCTGCTTGA
GGCGATCCGGGCGATCCGGNTGATCCGGGCGGGCAAGTTGGCCCCGGCCG
GCTGCNGCCTGGCACANCATGGCCCAGGGGCGCGGGGGCTACAACGGCGC
TCGTAGCGCGGCGCTGCACTCAATCGCGCGATCTGGTCGCTTTCGGGCCG
GTGTGCGCCAGCCTGCGCTCGTAAATTCGA
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