EY728262

Overview
NameEY728262
Unique NameEY728262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: YHJC_ECOLI (Uncharacterized HTH-type transcriptional regulator yhjC OS=Escherichia coli (strain K12) GN=yhjC PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = -1
Query:    2 VDQVKAMKVFVRIYERSSFTLAADDLNLPRATLTHTLNQFESWLGTRLLERSTRRVRPTLDGEAYYLRCVQXXXXXXXXXXAFRSVAP--KGRLRVDLHGTLAKYFVIPALPQFMARYPEIELSISEADR 385
            +D++ AM++F+++ E  SF+ AAD   LP+ +++  +   E  LGT+LL+R+TRRV+ T +G  YY R              F+  A    G+LR+D+   +AK  ++P L +F+  +P IEL +S  DR
Sbjct:    1 MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIELELSSHDR 130          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  508 ITQVAIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPGFS 780
            +T+ A+VTGASRGIG  +A QLA +GY VA+NYA S  +A  +V E++  G  + AIQ +VA A +VK +  E  +Q G +DVL+   G +
Sbjct:    3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGIT 93          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  508 ITQVAIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPGFS 780
            +T+ A+VTGASRGIG  +A QLA +GY VA+NYA S  +A  +V E++  G  + AIQ +VA A +VK +  E  +Q G +DVL+   G +
Sbjct:    3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGIT 93          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  508 ITQVAIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPGFS 780
            +T+ A+VTGASRGIG  +A QLA +GY VA+NYA S  +A  +V E++  G  + AIQ +VA A +VK +  E  +Q G +DVL+   G +
Sbjct:    3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGIT 93          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  508 ITQVAIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPGFS 780
            +T+ A+VTGASRGIG  +A QLA +GY VA+NYA S  +A  +V E++  G  + AIQ +VA A +VK +  E  +Q G +DVL+   G +
Sbjct:    3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGIT 93          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: FABG_STAAM (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabG PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  508 ITQVAIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPGFS 780
            +T+ A+VTGASRGIG  +A QLA +GY VA+NYA S  +A  +V E++  G  + AIQ +VA A +VK +  E  +Q G +DVL+   G +
Sbjct:    3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGIT 93          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: FABG_STAAC (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  508 ITQVAIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPGFS 780
            +T+ A+VTGASRGIG  +A QLA +GY VA+NYA S  +A  +V E++  G  + AIQ +VA A +VK +  E  +Q G +DVL+   G +
Sbjct:    3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGIT 93          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.099e-15
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  520 AIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPGFS 780
            A+VTGASRGIG  +A QLA +GY VA+NYA S  +A  +V E++  G ++ AIQ +VA   +VK +  E  +Q G VDVL+   G +
Sbjct:    5 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGIT 91          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: FABG_STAEQ (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.099e-15
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  520 AIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPGFS 780
            A+VTGASRGIG  +A QLA +GY VA+NYA S  +A  +V E++  G ++ AIQ +VA   +VK +  E  +Q G VDVL+   G +
Sbjct:    5 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGIT 91          
BLAST of EY728262 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.136e-14
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  514 QVAIVTGASRGIGAVVARQLAADGYAVAINYANSATEASRLVVELRQAGHQAIAIQGDVASAADVKRLFDETEAQLGKVDVLITTPG 774
            +VA+VTGAS+GIGA +A+ LA DG AV +NYA+S   A  +V  +  AG +AIA+Q DV+ A   + L +    Q G++DVL+   G
Sbjct:    7 KVAVVTGASKGIGAAIAKALAKDGAAVVVNYASSKAGADAVVEAITAAGGKAIAVQADVSQAVQARGLVEAAVQQFGRLDVLVNNSG 93          
The following BLAST results are available for this feature:
BLAST of EY728262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
YHJC_ECOLI2.704e-1635.38Uncharacterized HTH-type transcriptional regulator... [more]
FABG_STAAW2.289e-1546.153-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAS2.289e-1546.153-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAR2.289e-1546.153-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAN2.289e-1546.153-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAM2.289e-1546.153-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAC2.289e-1546.153-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAES5.099e-1547.133-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAEQ5.099e-1547.133-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
Y182_METEA1.136e-1445.98Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-E11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728262 ID=EY728262; Name=EY728262; organism=Citrus sinensis; type=EST; length=910bp
AGCGGTCCGCCTCGCTGATGGACAGCTCGATTTCCGGGTAGCGCGCCATG
AATTGCGGCAGCGCCGGGATCACGAAGTACTTGGCCAGAGTGCCGTGCAA
ATCCACCCGCAGGCGGCCCTTGGGGGCCACCGAGCGGAAGGCCAGTTCCG
CCTCTTCCAGCTCCGCCAGCAGTTGCACACAGCGCAGGTAATAGGCCTCG
CCATCAAGGGTCGGGCGGACGCGGCGGGTGCTGCGCTCCAGCAGGCGCGT
GCCGAGCCAGGACTCGAACTGGTTGAGGGTGTGGGTCAGGGTGGCACGCG
GCAGGTTCAGGTCATCGGCCGCCAGCGTGAAGCTGCTGCGTTCGTAAATC
CTCACGAACACTTTCATCGCTTTGACCTGGTCCACGGCGCGCCTCCATTG
TTGGCGATTCTTGAACAGTCAAGGCAACTCTGGCGTATTTATCGGCCTGG
GTAAACATGTGAATCTGCTTCCACACCCAACCACTCCCCCAAGGAAACCA
GATCATGATTACCCAAGTTGCTATCGTTACCGGCGCCTCACGCGGCATCG
GCGCCGTGGTTGCCAGACAACTGGCTGCCGACGGTTATGCCGTCGCCATC
AACTACGCCAACAGCGCCACCGAAGCGTCAAGGCTGGTAGTGGAGTTGCG
CCAGGCCGGCCACCAAGCCATAGCGATCCAGGGCGACGTAGCCAGCGCCG
CCGACGTCAAGCGCCTGTTCGACGAGACCGAAGCCCAGCTGGGCAAGGTT
GATGTGCTGATCACAACGCCCGGATTCTCANGGTGCTGCCGCTGGCCCAC
ACAGCGATGAGCTCTACAACAGAACTTCGACATCATACCCGCGCACCTTC
ACGCCTGCGTGAAGCCGCCCCGCCTGACGACGGCGGNCCATCGTAATTTC
TCAGCAGACC
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