EY728248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: PHF12_HUMAN (PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.460e-14 Identity = 47/175 (26.86%), Postives = 85/175 (48.57%), Query Frame = 3 Query: 240 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL--KRIPNGKWQCPKCT---QKNDQLKPISNLDSISKRARSKIITIKSQSGV--KSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKELDSLSVDV 743 S G E + +P T A++R + R S + +D C C GG+LLCCD CP +HLQC +PPL + +P G+W C +CT +K +Q K + +++ + ++ + + S + + +S+ ++ I IL R+ S G + ++ E + + D+ Sbjct: 17 SGGLMEQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDS----CDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKELGHVNGLVDKSGKRTTSPSSDTDLLDRSASKTELKAIAHARILERRASRPGTPTSSASTETPTSEQNDVDEDI 187
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.252e-14 Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 3 Query: 144 KMKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEEN--------LVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKP 530 K K T+ + R + KR+K G S+ ++E + S S R+ SA K++ R KK+ +DG YE C +C GG ++ CD+CPR YHL CLDP L++ P GKW CP C ++ Q +P Sbjct: 263 KKKGKGKKTAGLKFRFGGISNKRKK-----GSSSEEDEREESDFDSASIHSASVRSECSAALGKKSK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEP 396 HSP 2 Score: 78.5666 bits (192), Expect = 5.547e-14 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 3 Query: 312 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506 K++ + + ++ D + C +C GG LLCCD+CP +YHL CL+PPL IPNG+W CP+CT Sbjct: 397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCT 461
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: PHF12_MOUSE (PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.247e-14 Identity = 48/175 (27.43%), Postives = 82/175 (46.86%), Query Frame = 3 Query: 240 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL--KRIPNGKWQCPKCT---QKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK--VSQIFGNSILARKRSNKGKSVLALGVKSLEKELDSLSVDV 743 S G E + +P T A++R + R S + +D C C GG+LLCCD CP +HLQC +PPL + +P G+W C +CT +K +Q K + +++ + ++ + + S + + A K + I IL R+ S G ++ E + + D+ Sbjct: 17 SGGLMEQIQALLAPPKTDEAEKRSRKPEKESRRSGRATNHDS----CDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKELGHVNGLVDKSSKRTTSPSSDTDLLDRPASKTELKAIAHARILERRASRPGTPTSNASTETPTSEHNDVDEDI 187
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.462e-14 Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3 Query: 318 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506 EI + ++ +D + C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT Sbjct: 425 EILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 487 HSP 2 Score: 73.1738 bits (178), Expect = 2.331e-12 Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 3 Query: 267 TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 521 +S S + +AK++ K E + + Y C +C GG ++ CD+CPR YH+ CLDP +++ P GKW CP C ++ Q Sbjct: 332 SSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 413
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.236e-13 Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3 Query: 318 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506 EI + ++ +D + C +C GG LLCCD+CP +YH+ CL+PPL IPNG+W CP+CT Sbjct: 432 EILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 494 HSP 2 Score: 73.1738 bits (178), Expect = 2.331e-12 Identity = 29/90 (32.22%), Postives = 49/90 (54.44%), Query Frame = 3 Query: 264 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 521 V+ S + ++++L+ + + DGY + C +C GG ++ CD+CPR YH+ CLDP +++ P GKW CP C ++ Q Sbjct: 331 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 420
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 2.108e-13 Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 3 Query: 258 NLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506 +LV E + P + AD + +++ +D + C +C GG LLCCDSCP YH CL+PPL IP+G W+CP+C+ Sbjct: 400 HLVCLEPELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482 HSP 2 Score: 70.0922 bits (170), Expect = 1.973e-11 Identity = 33/85 (38.82%), Postives = 43/85 (50.59%), Query Frame = 3 Query: 270 SESPRNTPSAKRRLKNEINADRSSTKKK----GNDGYYYE---CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 503 S +P AK ++ N+ K K G DG + C +C GG ++ CD+CPR YHL CL+P L P GKW CP C Sbjct: 337 SGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC 421
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 74.7146 bits (182), Expect = 8.010e-13 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 3 Query: 345 KKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506 +K+ D + C +C GG LLCCD+C +YH+ CL+PPL IPNG+W CP+CT Sbjct: 448 EKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 501 HSP 2 Score: 73.1738 bits (178), Expect = 2.331e-12 Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = 3 Query: 273 ESPRNTPSAKR----RLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 521 + P T KR R K ++ + ++ DGY + C +C GG ++ CD+CPR YHL CLDP L R P GKW CP C ++ Q Sbjct: 339 DGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 429
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3) HSP 1 Score: 74.7146 bits (182), Expect = 8.010e-13 Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 3 Query: 336 SSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 503 ++ K+K D Y C +C GG+LLCCDSCP YH CL PPLK IP G W CP+C Sbjct: 26 NAKKQKFRDEEY--CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12 Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 3 Query: 375 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 521 EC +C GG L+CCD CPR +HL CL PPL+ IP+G W+C C Q Q Sbjct: 298 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 346
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.975e-12 Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 3 Query: 375 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 509 EC +C GG L+CCD CPR +HL CL PPL+ IP+G W+C C Q Sbjct: 300 ECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQ 344 The following BLAST results are available for this feature:
BLAST of EY728248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >EY728248 ID=EY728248; Name=EY728248; organism=Citrus sinensis; type=EST; length=902bpback to top |