EY728248

Overview
NameEY728248
Unique NameEY728248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: PHF12_HUMAN (PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.460e-14
Identity = 47/175 (26.86%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  240 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL--KRIPNGKWQCPKCT---QKNDQLKPISNLDSISKRARSKIITIKSQSGV--KSSGADKVSQIFGNSILARKRSNKGKSVLALGVKSLEKELDSLSVDV 743
            S G  E +    +P  T  A++R +      R S +   +D     C  C  GG+LLCCD CP  +HLQC +PPL  + +P G+W C +CT   +K +Q K + +++ +  ++  +  +  S + +  +S+   ++  I    IL R+ S  G    +   ++   E + +  D+
Sbjct:   17 SGGLMEQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDS----CDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKELGHVNGLVDKSGKRTTSPSSDTDLLDRSASKTELKAIAHARILERRASRPGTPTSSASTETPTSEQNDVDEDI 187          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.252e-14
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = 3
Query:  144 KMKDNSSSTSTMINRNWVLKRKRRKLPCGPGLSNGKEEN--------LVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE------CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQLKP 530
            K K     T+ +  R   +  KR+K     G S+ ++E          + S S R+  SA    K++    R   KK+ +DG  YE      C +C  GG ++ CD+CPR YHL CLDP L++ P GKW CP C ++  Q +P
Sbjct:  263 KKKGKGKKTAGLKFRFGGISNKRKK-----GSSSEEDEREESDFDSASIHSASVRSECSAALGKKSK----RRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEP 396          

HSP 2 Score: 78.5666 bits (192), Expect = 5.547e-14
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  312 KNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506
            K++ + +     ++  D +   C +C  GG LLCCD+CP +YHL CL+PPL  IPNG+W CP+CT
Sbjct:  397 KDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCT 461          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: PHF12_MOUSE (PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.247e-14
Identity = 48/175 (27.43%), Postives = 82/175 (46.86%), Query Frame = 3
Query:  240 SNGKEENLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPL--KRIPNGKWQCPKCT---QKNDQLKPISNLDSISKRARSKIITIKSQSGVKSSGADK--VSQIFGNSILARKRSNKGKSVLALGVKSLEKELDSLSVDV 743
            S G  E +    +P  T  A++R +      R S +   +D     C  C  GG+LLCCD CP  +HLQC +PPL  + +P G+W C +CT   +K +Q K + +++ +  ++  +  +  S + +    A K  +  I    IL R+ S  G        ++   E + +  D+
Sbjct:   17 SGGLMEQIQALLAPPKTDEAEKRSRKPEKESRRSGRATNHDS----CDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKELGHVNGLVDKSSKRTTSPSSDTDLLDRPASKTELKAIAHARILERRASRPGTPTSNASTETPTSEHNDVDEDI 187          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.462e-14
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  318 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506
            EI  +     ++ +D +   C +C  GG LLCCD+CP +YH+ CL+PPL  IPNG+W CP+CT
Sbjct:  425 EILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 487          

HSP 2 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 3
Query:  267 TSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 521
            +S S +   +AK++ K E         +  +  Y   C +C  GG ++ CD+CPR YH+ CLDP +++ P GKW CP C ++  Q
Sbjct:  332 SSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDY---CEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 413          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.236e-13
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  318 EINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506
            EI  +     ++ +D +   C +C  GG LLCCD+CP +YH+ CL+PPL  IPNG+W CP+CT
Sbjct:  432 EILEEVGGDLEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 494          

HSP 2 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 29/90 (32.22%), Postives = 49/90 (54.44%), Query Frame = 3
Query:  264 VTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 521
            V+  S   +  ++++L+      +   +    DGY  +    C +C  GG ++ CD+CPR YH+ CLDP +++ P GKW CP C ++  Q
Sbjct:  331 VSDGSTSRSSRSRKKLRTTKKKKKGEEEVTAVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQ 420          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.108e-13
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  258 NLVTSESPRNTPSAKRRLKNEINADRSSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506
            +LV  E   + P   +       AD  + +++ +D +   C +C  GG LLCCDSCP  YH  CL+PPL  IP+G W+CP+C+
Sbjct:  400 HLVCLEPELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482          

HSP 2 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 33/85 (38.82%), Postives = 43/85 (50.59%), Query Frame = 3
Query:  270 SESPRNTPSAKRRLKNEINADRSSTKKK----GNDGYYYE---CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 503
            S +P     AK ++ N+        K K    G DG +     C +C  GG ++ CD+CPR YHL CL+P L   P GKW CP C
Sbjct:  337 SGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC 421          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 8.010e-13
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 3
Query:  345 KKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCT 506
            +K+  D +   C +C  GG LLCCD+C  +YH+ CL+PPL  IPNG+W CP+CT
Sbjct:  448 EKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 501          

HSP 2 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = 3
Query:  273 ESPRNTPSAKR----RLKNEINADRSSTKKKGNDGYYYE----CVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 521
            + P  T   KR    R K ++    +   ++  DGY  +    C +C  GG ++ CD+CPR YHL CLDP L R P GKW CP C ++  Q
Sbjct:  339 DGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQ 429          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 8.010e-13
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 3
Query:  336 SSTKKKGNDGYYYECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKC 503
            ++ K+K  D  Y  C +C  GG+LLCCDSCP  YH  CL PPLK IP G W CP+C
Sbjct:   26 NAKKQKFRDEEY--CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRC 79          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 3
Query:  375 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQKNDQ 521
            EC +C  GG L+CCD CPR +HL CL PPL+ IP+G W+C  C Q   Q
Sbjct:  298 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 346          
BLAST of EY728248 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.975e-12
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 3
Query:  375 ECVICDLGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPKCTQ 509
            EC +C  GG L+CCD CPR +HL CL PPL+ IP+G W+C  C Q
Sbjct:  300 ECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCCLQ 344          
The following BLAST results are available for this feature:
BLAST of EY728248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PHF12_HUMAN1.460e-1426.86PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=... [more]
CHD5_HUMAN3.252e-1434.27Chromodomain-helicase-DNA-binding protein 5 OS=Hom... [more]
PHF12_MOUSE4.247e-1427.43PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=... [more]
CHD4_MOUSE9.462e-1447.62Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD4_HUMAN1.236e-1347.62Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]
CHDM_DROME2.108e-1339.76Chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
CHD3_HUMAN8.010e-1351.85Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]
CHD3_DROME8.010e-1355.36Chromodomain-helicase-DNA-binding protein 3 OS=Dro... [more]
AIRE_HUMAN1.046e-1255.10Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 ... [more]
AIRE_MOUSE3.975e-1257.78Autoimmune regulator OS=Mus musculus GN=Aire PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-D05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728248 ID=EY728248; Name=EY728248; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGGGAAGATTGGAATTGCTTCTTCAGAAATTTCAGAGTTGA
GATTGCTATCAAGCTCTGATATCTCTGCTTCTTCATTGACTCGTGACATG
GGCTTACTGCCACTGGTAGTGACAATGTAAGACTCAGCACTGAAAGATGA
AGGATAACAGTTCATCAACTAGTACAATGATTAATAGAAACTGGGTCTTG
AAGCGAAAAAGAAGAAAGTTGCCTTGTGGACCTGGTCTATCCAATGGTAA
AGAAGAGAACTTAGTGACCTCAGAATCTCCAAGGAATACACCTTCAGCTA
AACGCAGGCTAAAGAATGAAATAAATGCTGATCGATCTTCAACCAAGAAG
AAAGGAAATGATGGGTATTACTATGAATGTGTGATCTGTGATCTTGGCGG
TAACCTGTTATGTTGCGATAGCTGTCCCAGAACCTATCATCTTCAGTGCC
TTGATCCACCTCTTAAGCGAATTCCGAATGGAAAATGGCAATGCCCGAAG
TGCACACAGAAAAATGACCAGCTCAAGCCCATCAGCAATCTGGATTCCAT
CTCAAAGCGAGCAAGATCAAAAATAATCACCATAAAATCTCAAAGTGGGG
TGAAGTCATCTGGTGCTGATAAAGTATCCCAGATCTTCGGAAACTCCATT
CTTGCCAGAAAAAGGTCCAATAAGGGAAAATCTGTTTTGGCTCTCGGAGT
GAAATCCCTTGAGAAAGAGTTGGATTCCCTCTCAGTAGATGTATCTTGTA
GCACCAAGCCTGAGAATACGTCCGCTGGGTGTCCTGTAGAGGGTAGTCAT
CTTTGTCGAATGATGATGACGAGAAGCACTTCATGCTTCTCCACAGACTC
ACTTGCAGACACAAGTCCATCCTGCTGAGGAAGTCTCCTCATTCTCAGTC
AC
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