EY728196

Overview
NameEY728196
Unique NameEY728196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_MOUSE (Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.194e-25
Identity = 61/100 (61.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:    3 MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKG 299
            MA+EK   LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  F +DR+WLNG+E  +G  R Q CL+EIR  A     TE G
Sbjct:    1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDG 100          
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_BOVIN (Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.354e-24
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 3
Query:    3 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRA 272
            MA+EK +++VT   P NIAV+KYWGKRDE LILP+N S+SVTL  D L TTTT A+S  F +DR+WLNG+E  +G  R Q CL+EIR  A
Sbjct:    1 MASEKPIVVVTCTAPVNIAVVKYWGKRDEELILPINSSLSVTLHQDQLKTTTTAAISRDFTEDRIWLNGREEDMGHPRLQACLREIRRLA 90          
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_RAT (Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.526e-23
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:    3 MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKG 299
            MA+EK   LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTT A+S  F +DR+WLNG+E  +G  R Q CL+EIR  A     T  G
Sbjct:    1 MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINPSLSVTLHQDQLKTTTTAAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTGDG 100          
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_HUMAN (Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.399e-23
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3
Query:    3 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRA 272
            MA+EK +  VT   P NIAVIKYWGKRDE L+LP+N S+SVTL  D L TTTT  +S  F +DR+WLNG+E  +G  R Q CL+EIR  A
Sbjct:    1 MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDFTEDRIWLNGREEDVGQPRLQACLREIRCLA 90          
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_DANRE (Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 54/82 (65.85%), Postives = 60/82 (73.17%), Query Frame = 3
Query:   27 MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRA 272
            MVT   P NIAVIKYWGKRDE LILPVN S+SVTL  DHL TTTT+A S SF +D +WLNGKE  +   R Q+CL EIR  A
Sbjct:   11 MVTCTAPVNIAVIKYWGKRDEDLILPVNASLSVTLHQDHLRTTTTIACSRSFHKDCIWLNGKEQDISHPRLQSCLLEIRRLA 92          
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_DICDI (Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   30 VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKI 308
            VT   P NIAVIKYWGKRDE +ILP+N S+S TL  D L TTTT+  S  + +D ++LNGK+  +   RYQN LK IRSRA  + D +  + I
Sbjct:    6 VTCTAPVNIAVIKYWGKRDENIILPLNSSLSGTLHQDDLKTTTTIVASEDYTEDELYLNGKKEDINAVRYQNVLKMIRSRATKLMDKKHCVHI 98          
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_YEAST (Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae GN=ERG19 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.634e-17
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   21 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGI 302
            V   +   P NIA +KYWGKRD  L LP N SISVTL  D L T T+ A +P F++D +WLNG+  S+   R QNCL+++R    ++E  +  +
Sbjct:    3 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLRQLRKEMESKDASL 96          
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_DEBHA (Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii GN=ERG19 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 8.108e-17
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:   33 TAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGI 302
            +A  P NIA +KYWGKRD++L LP N SISVTL  + L T T+VA S  F +D++WLNGK  SL   R + CL ++R+   ++E  +  I
Sbjct:    7 SATAPVNIATLKYWGKRDKSLNLPTNSSISVTLSQNDLRTLTSVAASEDFKEDKLWLNGKLESLESERTKACLADLRTLRKELESNDSSI 96          
BLAST of EY728196 vs. ExPASy Swiss-Prot
Match: ERG19_SCHPO (Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe GN=erg19 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.359e-16
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   12 EKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGK-EISLGGGRYQNCLKEIRSRACDVED 287
            +K V   T   P NIAVIKYWGKRD  L LP N SISVTL  D L T TT + S  F+ D +WLNG  E      R + C++E+R    D+E+
Sbjct:    2 DKKVYQCTVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFENDTLWLNGNAEEIFANKRLRVCVEELRKARLDLEE 94          
The following BLAST results are available for this feature:
BLAST of EY728196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ERG19_MOUSE6.194e-2561.00Diphosphomevalonate decarboxylase OS=Mus musculus ... [more]
ERG19_BOVIN2.354e-2460.00Diphosphomevalonate decarboxylase OS=Bos taurus GN... [more]
ERG19_RAT1.526e-2359.00Diphosphomevalonate decarboxylase OS=Rattus norveg... [more]
ERG19_HUMAN3.399e-2358.89Diphosphomevalonate decarboxylase OS=Homo sapiens ... [more]
ERG19_DANRE2.877e-2265.85Diphosphomevalonate decarboxylase OS=Danio rerio G... [more]
ERG19_DICDI4.593e-2052.69Diphosphomevalonate decarboxylase OS=Dictyostelium... [more]
ERG19_YEAST1.634e-1744.68Diphosphomevalonate decarboxylase OS=Saccharomyces... [more]
ERG19_DEBHA8.108e-1747.78Diphosphomevalonate decarboxylase OS=Debaryomyces ... [more]
ERG19_SCHPO2.359e-1648.39Diphosphomevalonate decarboxylase OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-108-G02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728196 ID=EY728196; Name=EY728196; organism=Citrus sinensis; type=EST; length=996bp
CGATGGCGGCGGAGAAATGGGTACTGATGGTGACGGCGCAGACGCCGACG
AACATAGCTGTGATAAAGTACTGGGGGAAGCGAGACGAAACCCTAATTTT
GCCTGTCAATGATAGCATCAGCGTCACCCTTGATCCCGATCACCTCTGTA
CTACCACAACCGTTGCCGTCAGTCCTAGCTTTGACCAAGATCGTATGTGG
CTCAATGGCAAAGAAATTTCTCTTGGAGGGGGAAGGTACCAGAATTGTTT
GAAGGAAATTCGGAGTCGTGCTTGTGATGTTGAGGACACGGAGAAAGGGA
TCAAGATTGAGAAGAAGGACTGGCAGAAATTTGCATTTACACATTGCTTC
GTTTAAACAATTTTCCGACAGCCGCTGGATTGGCTTCCTCTGCTGCTGGT
TTTGCCCTGCCTTGGTAAAATTGTTGGAATTTATTAACCAAACGCTATCT
ATTTTATTGATTTATAACCTTTTTGTTTCAAAAGAAAGTTTTTAAGGATT
ATCCGGGGAAAATTGGTCCTTTTTCTTTTTCCTTTTTTGGGGTTTAATGG
CCGTTTTTTTTCCCTGGGCTAACCTGAATAATTTTTGAAAAAAAAAACCA
AGCCCAGCTTTTTCGCTTTAACTAGGGCAAGGGGTTCAGGGGACGTGGCC
TTGGCCCAAATTCCGGTTTGGGGGGGAATTTTGCCAAGAGGAAAAACGGG
GGAAAAAAAAAAGAAAATGGAAAAGGCACCACCCTTTACACTTACAATTT
TTTTGAAAGAAAAAACCCCCGGGGAAAATAGATCTTTTGTTATTAATTTT
TATTCGGTTGGGGGGGAATATCCCACCGGAAAAAAAAGAAAAAAAAAAAA
AATCACCCCCACCCAGGAGAAATGGGGTTAGAAAAAAAATGATTATATAA
AAAATAAAATTTTTTTTGTTTTTTTTTACTAAAAAACATAATAAAAACAA
AAACAAGAGGAAAAAGTTTTTGTGGGTCCCCACCAATAGAACACAA
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