EY728165

Overview
NameEY728165
Unique NameEY728165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728165 vs. ExPASy Swiss-Prot
Match: ZDS_NARPS (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.781e-32
Identity = 88/181 (48.62%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  289 MGSSVLFPATSVTGVSWSRVQE----KCRRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVKLLDQGHKVDIYESRSFMGGKSGVHLAIKRGTQLK*ARPFSF------WRLKNRVPNWXXXXXXXXXXXXXXXQTQNFLKSGGGKLGKIRFRGPPLGNPL 801
            M SS     +S  GV   +V+     + + F +R++LD  VSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAV+LLDQGH+VDIYESR F+GGK G     KRG  ++      F      +RL  +V                   T  F+ + GG++G++ FR  P+G PL
Sbjct:    1 MASSTCLIHSSSFGVGGKKVKMNTMIRSKLFSIRSALDTKVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRQFIGGKVG-SFVDKRGNHIEMGLHVFFGCYNNLFRLMKKV--------GADENLLVKDHTHTFV-NRGGEIGELDFR-LPMGAPL 170          
BLAST of EY728165 vs. ExPASy Swiss-Prot
Match: ZDS_TARER (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.201e-31
Identity = 89/190 (46.84%), Postives = 110/190 (57.89%), Query Frame = 1
Query:  295 SSVLFPATSVTGVSWS---------------RVQEKCRRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVKLLDQGHKVDIYESRSFMGGKSGVHLAIKRGTQLK*ARPFSF------WRLKNRVPNWXXXXXXXXXXXXXXXQTQNFLKSGGGKLGKIRFRGPPLGNPL 801
            +S+ FPATS  G   S                 + K R+  VR+ LD +VSDM  NAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAV+LLDQGH+VDIYESR+F+GGK G     K+G  ++      F      +RL  +V                   T  F+ + GG+LG++ FR  P+G PL
Sbjct:   10 TSLCFPATSAAGARTSFRTTDTFLRYRRSRQLTRLKVRKAVVRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVG-SFVDKQGNHIEMGLHVFFGCYNNLFRLLKKV--------GAEKNLLVKDHTHTFV-NRGGELGELDFRF-PVGAPL 188          
BLAST of EY728165 vs. ExPASy Swiss-Prot
Match: ZDS_ARATH (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 4.180e-31
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:  289 MGSSVLFPATSVTGVSWSRVQEKCRRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVKLLDQGHKVDIYESRSFMGGKSG 588
            M SSV+F AT     S S    K RRF V +SLD++VSDMSVNAPKGLFPPEP  Y+GPKLKVAIIGAGLAGMSTAV+LLDQGH+VDIY+SR+F+GGK G
Sbjct:    1 MASSVVFAATG----SLSVPPLKSRRFYVNSSLDSDVSDMSVNAPKGLFPPEPVPYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYDSRTFIGGKVG 96          
BLAST of EY728165 vs. ExPASy Swiss-Prot
Match: ZDS_SOLLC (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.588e-30
Identity = 80/153 (52.29%), Postives = 98/153 (64.05%), Query Frame = 1
Query:  361 RRFCVRASLDANVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVKLLDQGHKVDIYESRSFMGGKSGVHLAIKRGTQLK*ARPFSF------WRLKNRVPNWXXXXXXXXXXXXXXXQTQNFLKSGGGKLGKIRFRGPPLGNPL 801
            R+  +RA LD+ VSDMS NAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAV+LLDQGH+VDIYESR+F+GGK G     +RG  ++      F      +RL  +V                   T  F+   GG++G++ FR  P+G PL
Sbjct:   44 RKSVIRADLDSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVG-SFVDRRGNHIEMGLHVFFGCYNNLFRLLKKV--------GAEKNLLVKEHTHTFVNK-GGEIGELDFRF-PVGAPL 185          
BLAST of EY728165 vs. ExPASy Swiss-Prot
Match: ZDS_CAPAN (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.036e-30
Identity = 79/149 (53.02%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  373 VRASLDANVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVKLLDQGHKVDIYESRSFMGGKSGVHLAIKRGTQLK*ARPFSF------WRLKNRVPNWXXXXXXXXXXXXXXXQTQNFLKSGGGKLGKIRFRGPPLGNPL 801
            +RA L++ VSDMS NAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAV+LLDQGH+VDIYESR+F+GGK G     KRG  ++      F      +RL  +V                   T  F+   GG++G++ FR  P+G PL
Sbjct:   48 IRADLNSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVG-SFVDKRGNHIEMGLHVFFGCYNNLFRLMKKV--------GAEKNLLVKEHTHTFVNK-GGEIGELDFRF-PVGAPL 185          
BLAST of EY728165 vs. ExPASy Swiss-Prot
Match: ZDS_MAIZE (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.689e-21
Identity = 63/129 (48.84%), Postives = 78/129 (60.47%), Query Frame = 1
Query:  430 LFPPEPEHYRGPKLKVAIIGAGLAGMSTAVKLLDQGHKVDIYESRSFMGGKSGVHL-----AIKRGTQLK*ARPFSFWRLKNRVPNWXXXXXXXXXXXXXXXQTQNFLKSGGGKLGKIRFRGPPLGNPL 801
            LFPPEPEHYRGPKLKVAIIGAGLAGMSTAV+LLDQGH+VD+YESR F+GGK G  +      I+ G  +      + +RL  +V                   T  F+   GG +G++ FR  P+G PL
Sbjct:   52 LFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDLYESRPFIGGKVGSFVDRQGNHIEMGLHVFFGCYSNLFRLMKKV--------GADNNLLVKEHTHTFVNK-GGTIGELDFRF-PVGAPL 170          
The following BLAST results are available for this feature:
BLAST of EY728165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ZDS_NARPS3.781e-3248.62Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_TARER3.201e-3146.84Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ARATH4.180e-3172.00Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SOLLC1.588e-3052.29Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_CAPAN6.036e-3053.02Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_MAIZE6.689e-2148.84Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-108-D03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728165 ID=EY728165; Name=EY728165; organism=Citrus sinensis; type=EST; length=959bp
AAAAATAAATAAATAAATAAAACAAAGAAGTACTTTGCCATTTGCCAACC
TCTCTAAAACAGTTCAGTTCCCTGACAAAACTCTCTTCCTTAGCATCTTG
TTAGATTCTGATACTCAAAGATACCCTTTTGTATTATTTTAGTTTCTTAA
TTAAATTTTGTTGATGTCGACGAATCTTTGTTGATATCAAAGAAAAATAC
TTTGTTATCGAAACAAAAGAGAGCAGAGCTGGGCTGAGCTGAATTGAGTT
CCGATTGAATTTCTTGATTTCAGCTCGGGATTTTCAATATGGGTTCTTCA
GTTCTGTTTCCTGCAACTTCAGTCACTGGTGTTAGTTGGTCTCGGGTTCA
AGAGAAGTGTCGAAGATTCTGTGTACGGGCTTCTTTGGACGCTAATGTTT
CTGATATGAGTGTTAATGCACCCAAGGGTTTGTTTCCACCAGAACCAGAA
CATTATAGAGGACCAAAGCTGAAAGTGGCTATTATTGGAGCTGGGCTTGC
GGGCATGTCAACGGCAGTGAAATTGTTGGATCAAGGCCACAAGGTGGATA
TATATGAATCAAGGTCTTTTATGGGTGGTAAAAGTGGGGTTCATTTGGCA
ATAAAACGTGGAACCCAATTGAAATGAGCCCGCCCCTTTTCCTTTTGGAG
GCTCAAAAATCGGGTTCCCAATTGGAAAAAAAGGGCGGGGGGGGGAAAAA
AAATTTAATTTGGAAAGGGTCAAACCCAAAATTTTTTAAAATCAGGGGGG
GGAAAATTGGGAAAAATTAGATTTCGGGGTCCCCCATTGGGAAACCCCCT
GAAAGTGGGAAATTCCGGGCTTTTTTTTGCAAAAAAAAACCCCATTATAA
AATATTAAAAAAAAAAAACAAAAAAAAGGGTTTTGTGCCTTTTGTTCCCA
ATCCCCCTGGTTGTTAAAAGGGGCCCTTTTTTTTTTTACCTCGCGAAGGA
GGACCCCTC
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